| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,330,665 – 17,330,777 |
| Length | 112 |
| Max. P | 0.526862 |
| Location | 17,330,665 – 17,330,777 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.07 |
| Mean single sequence MFE | -35.13 |
| Consensus MFE | -28.54 |
| Energy contribution | -30.35 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17330665 112 + 22407834 GCGUGUGACAGGCGGAUGCCUAAGGCGUUUAUCUAUGUAACAUGAUGAUAUCGCUUUUUUGCCUUUUCCCGCUUUUGACGUGGGCGUGGCACAGACACCCACACACGCAAAU (((((((..((((....))))((((((.(((((.(((...))))))))...))))))..((((....(((((.......)))))...))))..........))))))).... ( -39.30) >DroSec_CAF1 28141 112 + 1 GCGUGUGACAGGCGGAUGCCUAAGGCGUUUAUCUGUGUAACAUGAUGAUAUCGCUUUUUUGCCUUUUCCCGCUUUUGACGUGGGUGUGGCACAGACACCCACACACGCAAAU ((((((...((((((..((..((((((.(((((((.....)).)))))...))))))...))......)))))).....((((((((.......)))))))))))))).... ( -42.50) >DroSim_CAF1 30655 112 + 1 GCGUGUGACAGGCGGAUGCCUAAGGCGUUUAUCUGUGUAACAUGAUGAUAUCGCUUUUUUGCCUUUUCCCGCUUUUGACGUGGGCGUGGCACAGACACCCACACACGCAAAU (((((((..((((....))))((((((.(((((((.....)).)))))...))))))..((((....(((((.......)))))...))))..........))))))).... ( -40.20) >DroEre_CAF1 30444 111 + 1 GCGUGUGACAGGCGGCUGCCUUAGGCGUUUAUCUGUGUAACAUGAUGAUAUCGCUUUUUUGCCUUUUCCAGCUUUUGACGAGGGCGUGGUACAA-AACCCACACACGCAAAU (((((((..((((....)))).(((((.(((((((.....)).)))))...)))))....((((((..(((...)))..))))))(.(((....-.)))).))))))).... ( -34.30) >DroYak_CAF1 25189 112 + 1 GCGUGUGACAGGCGGCUGCCUUAGGCGUUUAUCUGUGCAACAUGAUGAUAUAGCUUUUUUGCCUUUUCCCGCUUUUGACGAGGGCGUGGCACAAAAACCCACACACGCAAAU (((((((..((((....))))..((.((((...(((((..............((......))......((((((((...))))))).)))))).)))))).))))))).... ( -35.00) >DroAna_CAF1 35334 102 + 1 GGCUGUGACAGGCACCCGCCUAAGGCCUUUAUCUGUGUUAAAUGAUGGUAUCGCUUG-UUGCCUUUCCCUAUUUUUUUUUU---UGUUGCAGAAACACACACACAC------ ..(((..((((((....))))(((((....((..(((.((........)).)))..)-).)))))................---.))..)))..............------ ( -19.50) >consensus GCGUGUGACAGGCGGAUGCCUAAGGCGUUUAUCUGUGUAACAUGAUGAUAUCGCUUUUUUGCCUUUUCCCGCUUUUGACGUGGGCGUGGCACAAACACCCACACACGCAAAU (((((((..((((....)))).(((((.(((((..........)))))...)))))...((((....(((((.......)))))...))))..........))))))).... (-28.54 = -30.35 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:03 2006