| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,834,601 – 1,834,700 |
| Length | 99 |
| Max. P | 0.944846 |
| Location | 1,834,601 – 1,834,700 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.01 |
| Mean single sequence MFE | -18.42 |
| Consensus MFE | -4.65 |
| Energy contribution | -5.32 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.25 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1834601 99 - 22407834 UUCCCCUAUUUUUCUGUACUUUUUCUAUGCUUUUUCUGUAC-----------UUGUUCUGCACU-UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGUAU .........................(((((((..((((...-----------.(((((((((((-..(((....)))..)))))))...))))...))).)..))))))). ( -18.50) >DroSec_CAF1 2809 99 - 1 UUCCCCUAUUUUUCUGUACUUUUUCUCUGCCUUCUCUGUAC-----------UUUUUCUGUACU-UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGGAU .........................(((((((...(((...-----------.(((((((((((-..(((....)))..))))))).)))).....)))....))))))). ( -22.20) >DroSim_CAF1 2908 99 - 1 UUUCCCUAUUUUUCUGUACUUUUUCUCUGCCUUCUCUGUAC-----------UUUUUCUGUACU-UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGGAU .........................(((((((...(((...-----------.(((((((((((-..(((....)))..))))))).)))).....)))....))))))). ( -22.20) >DroEre_CAF1 2942 77 - 1 UUCCCCUAUUUUUCUGUACGUUUUCU---------------------------------GCACU-UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGGAU .((((((......(((...(((((((---------------------------------(((((-..(((....)))..))))))).)))))....)))....))).))). ( -20.30) >DroYak_CAF1 2960 110 - 1 UUCUACUAUUUUUCUCUACUUUUUCUGUAUUUUUUCUGUACUUUUUCUGUACUUCUGCUGUACU-UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGGAC .......................(((((.........((((.......))))...(((((((((-..(((....)))..))))))))).................))))). ( -20.90) >DroPer_CAF1 3239 79 - 1 ----CAUAUUUAUUUUU---------AU------CCUUUUA-----------UUUUUCUGUAGUUUUUUAUUUAUGGUUAGUGCUGCAAAAUAUAUCAGCUUCA--CCGAA ----.............---------..------.......-----------......................((((....((((..........))))...)--))).. ( -6.40) >consensus UUCCCCUAUUUUUCUGUACUUUUUCUAUGC_UU_UCUGUAC___________UUUUUCUGUACU_UUUUAUUUAUGGUUAGUGCAGCAAAAUAUUUCAGCAUCAGGCGGAU ............(((((..........................................(((((...(((....)))..))))).((...........)).....))))). ( -4.65 = -5.32 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:14 2006