Locus 6228

Sequence ID 2L_DroMel_CAF1
Location 17,317,402 – 17,317,515
Length 113
Max. P 0.979244
window9953

overview

Window 3

Location 17,317,402 – 17,317,515
Length 113
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 95.63
Mean single sequence MFE -25.28
Consensus MFE -22.90
Energy contribution -23.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.91
SVM decision value 1.83
SVM RNA-class probability 0.979244
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17317402 113 - 22407834
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CUCCCCAUUGCGGUUUUUCUCACCCACACAUUGCUCACAUUUCCCAAGU
(((((((((..(((((((.......(((..((.......))..))).....)))))))......----........((.(((.......)))))....))))))))).......... ( -25.50)
>DroSec_CAF1 15011 113 - 1
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CACCCCAUUGCGGUUUUCCUCACCCACACAUUGCUCACAUUUCCCAAGU
(((((((((((....(((((...(((.((((((.((.........)).)))))).)))....))----))).....)))(((.......))).......)))))))).......... ( -28.50)
>DroSim_CAF1 16548 113 - 1
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CACCCCAUUGCGGUUUUCCUCACCCACACAUUGCUCACAUUUCCCAAGU
(((((((((((....(((((...(((.((((((.((.........)).)))))).)))....))----))).....)))(((.......))).......)))))))).......... ( -28.50)
>DroEre_CAF1 16987 116 - 1
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUACGUACCACCUCUUUGCGGUUUU-CUCACCCACACAUUUCUCACAUUUCCCAAGU
(((((((((((((..((.....))..)))))))).................(.((((((.............)))))).).....-................))))).......... ( -22.02)
>DroYak_CAF1 9299 112 - 1
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CUCCCUUUUGCGGUUUU-CUCACCCACACAUUUCUCACAUUUCCCAAGU
(((((((((((((..((.....))..)))))))).................((.((((......----...)))).)).(((...-...)))..........))))).......... ( -21.90)
>consensus
UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC____CACCCCAUUGCGGUUUU_CUCACCCACACAUUGCUCACAUUUCCCAAGU
(((((((((..(((((((.......(((..((.......))..))).....)))))))..................((.(((.......)))))....))))))))).......... (-22.90 = -23.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:49 2006