Locus 6218

Sequence ID 2L_DroMel_CAF1
Location 17,308,872 – 17,308,991
Length 119
Max. P 0.650534
window9936

overview

Window 6

Location 17,308,872 – 17,308,991
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.65
Mean single sequence MFE -24.78
Consensus MFE -16.98
Energy contribution -18.62
Covariance contribution 1.64
Combinations/Pair 1.10
Mean z-score -2.83
Structure conservation index 0.69
SVM decision value 0.24
SVM RNA-class probability 0.650534
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17308872 119 + 22407834
GUAAAUUAUGCACUCGAAUCCAAGCAUAAAAAAAAAAAAAAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA
.....((((((............))))))...............((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60)
>DroSec_CAF1 6390 111 + 1
GUAAAUUAUGCACCCGAAUCCAAGCAUAAAA--------AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA
.....((((((............))))))..--------.....((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60)
>DroSim_CAF1 7883 111 + 1
GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA--------AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA
.....((((((............))))))..--------.....((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60)
>DroEre_CAF1 9050 111 + 1
GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA---------AAACGAGCGAAUACUCACAACAGUUCGCUGUGUAAACUUAAGAUAGGGAAAGAGCCAACUUUUCCCGAGAUUCCCUUUAA
.....((((((............))))))..---------....(((.((((.((((((.(((....))))))............(((((((.......)))))))))))))).)))... ( -23.80)
>DroYak_CAF1 1341 111 + 1
GUAAAUUAUGCAGUCGAAUCCAAGCAUAAAA---------AAACGAGAAAAUACUCACAACAUUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUUUUCCUGAGAUUCCCUUUAA
.....((((((((.((((.....(.......---------...)(((......))).......))))))))))))........(((((((((......)))))))))............. ( -19.70)
>DroAna_CAF1 17530 94 + 1
GUAAAUUAUGCACCCGAAAC----CCUAAAA--------AAAA-CUGAAAAUAUCCACAACAGUCCUCUGUGUAAACAAAAAACGGGGGG-------------CCUGAGAUUCUCUUUAA
....................----.......--------....-................(((((((((((...........))))))))-------------.)))............. ( -13.40)
>consensus
GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA________AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU_UCCUGAGAUUCCCUUUAA
.....((((((............))))))...............((((((((.((((((.(((....))))))............(((((((......))).)))))))))))))))... (-16.98 = -18.62 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:30 2006