Locus 6211

Sequence ID 2L_DroMel_CAF1
Location 17,302,076 – 17,302,176
Length 100
Max. P 0.829046
window9926

overview

Window 6

Location 17,302,076 – 17,302,176
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -25.38
Consensus MFE -24.53
Energy contribution -24.79
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.97
SVM decision value 0.71
SVM RNA-class probability 0.829046
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17302076 100 - 22407834
UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGCUUUGGCUUCCAUUUAACCCAUUCC
..((.......((..(((.....)))..))((((((((((........(((......))).......)))))))((....)).))).......))..... ( -25.76)
>DroSec_CAF1 152689 100 - 1
UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC
..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. ( -25.66)
>DroSim_CAF1 146620 100 - 1
UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC
..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. ( -25.66)
>DroYak_CAF1 143315 99 - 1
UCGGCUUCCCCGGGGAUACAAUAUAUUUCCCGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUU-UUCGGGGUCGUUUUGGCUUCCAGUUAACCCAUUCC
..((...((.((((((..........)))))).(((((((........(((......)))....-..))))))).....))...)).............. ( -24.44)
>consensus
UCGGCUUCCCUGGGGAUACAAUAUAUUUCCGGAGACUCCGCCUUCCUUUGCAGUUUUGCAUAUUUUUCGGGGUCGUUUUGGCUUCCAUUUAACCCAUUCC
..((...((((((..(((.....)))..)))).(((((((........(((......))).......))))))).....))...)).............. (-24.53 = -24.79 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:20 2006