Locus 6199

Sequence ID 2L_DroMel_CAF1
Location 17,287,707 – 17,287,827
Length 120
Max. P 0.935066
window9902

overview

Window 2

Location 17,287,707 – 17,287,827
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.61
Mean single sequence MFE -36.77
Consensus MFE -24.81
Energy contribution -24.73
Covariance contribution -0.08
Combinations/Pair 1.45
Mean z-score -3.17
Structure conservation index 0.67
SVM decision value 1.24
SVM RNA-class probability 0.935066
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17287707 120 + 22407834
CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCAUCCGCCGAGGAUUCUUCUGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAUGUGUGUCUCAACUUUUC
......((((((............((((((((((.(((((((.......))))))).)))))))))).....((((((.......))))))............))))))........... ( -37.00)
>DroGri_CAF1 270688 120 + 1
CUUGCGACGCACUUUCUCAUCAAUGGACUCUGGGAAAUCUUCGUCGUCCGAGGAAUCAUCCGAAUCGACAUCCAUGCCAAACGAUGGAGUCUCCGAUUCGGCGGCCAUGCGUAGUUUUUC
...((.(((((.(((((((((....))...))))))).....((((((...(((....)))((((((((.(((((........))))))))...)))))))))))..))))).))..... ( -33.90)
>DroSec_CAF1 137819 120 + 1
CAUUCUUCGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGACUCAUCUGAGUCUCCUUCAAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUGUGUCUCAACUUUUC
.......((((((((....((...(((((((((..((((((((.....))))))))..))))))))).....((((((.......))))))...))....))))))))............ ( -41.60)
>DroSim_CAF1 130966 120 + 1
CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGAUUCAUCUGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUGUGUCUCAACUUUUC
......(((((((((....((...(((((((((..((((((((.....))))))))..))))))))).....((((((.......))))))...))....)))))))))........... ( -41.00)
>DroEre_CAF1 126066 120 + 1
CAUUCUCCGCACUUUUUCCUCCACGGACUCGGGAUAGUCAUCGUCCGCCGAGGAUUCAUCCGACUCUCCUUCGAUGCCAAAAGCCGGCAUUUCCGACAUUGACUUCUGUCGCAGCUUCUC
........((.............((((...((((.((((.(((.....)))(((....))))))).))))..((((((.......)))))))))).....(((....)))))........ ( -30.70)
>DroYak_CAF1 128871 120 + 1
CAUCCUUCGCACUUUUUCCUCCACAGAUUCGGGAUAGUCUUCGUCCGCCGAGGAUUCCUCCGAGUCUCCGUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUCAGUCGCAGCUUUUC
........((..............(((((((((..((((((((.....))))))))..))))))))).....((((((.......)))))).((((((....))))))..))........ ( -36.40)
>consensus
CAUUCUACGCACUUUUUCCUCUACAGACUCGGGAAAGUCCUCGUCCGCCGAGGAUUCAUCCGAGUCUCCUUCGAUGCCAAAUGCCGGCAUUUCUGACUUUGAAGUCUGUCGCAACUUUUC
.......................((((((((((..((((((((.....))))))))..))))))))......((((((.......))))))..)).....(((((........))))).. (-24.81 = -24.73 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:57 2006