Locus 6196

Sequence ID 2L_DroMel_CAF1
Location 17,282,422 – 17,282,521
Length 99
Max. P 0.525947
window9898

overview

Window 8

Location 17,282,422 – 17,282,521
Length 99
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 77.24
Mean single sequence MFE -19.04
Consensus MFE -11.24
Energy contribution -11.68
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value -0.01
SVM RNA-class probability 0.525947
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17282422 99 + 22407834
AUAAACUUGAAAAUACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCACAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA--------------UCCCCA-----UUCAAGAAC
.....((((((.......(((((((((....))))(((((.((((((......))))))..........)))))..)))))...--------------......-----))))))... ( -18.79)
>DroSec_CAF1 121613 92 + 1
AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCAAAACUAUUACUCCUCUAUUUCAGGUUCGUAUUUUA--------------ACCCCA-----U-------C
(..(((((((((.....(((.(.((((....)))).)))).((((((......)))))).......)))))))))..)......--------------......-----.-------. ( -17.00)
>DroSim_CAF1 125390 99 + 1
AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCGACAUGUGUAAUGCAAAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA--------------ACCCCA-----UUCAAGAAC
.....((((((.......(((((((((((((...((...(.((((((......)))))).).))))))))....)))))))...--------------......-----))))))... ( -17.29)
>DroEre_CAF1 120688 118 + 1
GUCAACUUGAAAACGCUCAAUGCGGGAAGUAUCCAACUUGUGUAAUGCAGAAGCAAUACUCCUUUACUUCAGGUUCGUUUACUAUCUGCAACAAAAUAAUUCAACCGAGUACAACAAU
......((((......))))((((((.((((..(((((((.((((.(.((.(....).)).).))))..)))))).)..)))).))))))........((((....))))........ ( -21.90)
>DroYak_CAF1 123006 103 + 1
AUCAACUUGAAAACGCUCAAUGCGGGAAGUAUCCGACUUGUGUAAAGAAGGAGCAAUACUCCUCUACUUCAGGUUCGUUUAUUA--------------AUUCUACCAAAUACAACAA-
......(((....(((.....)))(((((((..(((((((.((..(((.((((.....)))))))))..)))).)))..)))..--------------.))))..))).........- ( -20.20)
>consensus
AUAAACUUGAAAACACUCAAUGCGGGAAGUAUCCCACUUGUGUAAUGCAAAACCAUUACUCCUCUACUUCAGGUUCGUAUUUUA______________ACCCCA_____UACAACAAC
...((((((((.............(((....))).......((((((......))))))........))))))))........................................... (-11.24 = -11.68 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:53 2006