Locus 6192

Sequence ID 2L_DroMel_CAF1
Location 17,264,967 – 17,265,078
Length 111
Max. P 0.786108
window9894

overview

Window 4

Location 17,264,967 – 17,265,078
Length 111
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 59.23
Mean single sequence MFE -22.90
Consensus MFE -10.72
Energy contribution -11.17
Covariance contribution 0.45
Combinations/Pair 1.25
Mean z-score -1.63
Structure conservation index 0.47
SVM decision value 0.57
SVM RNA-class probability 0.786108
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17264967 111 - 22407834
UUUCUUAAA-------UGGAAGCAAUUAUUCUAGCAAAUAAGCUGUCAAUCGACAGUAAUUAUAUUAAAAUGGAAAUAAAAUGGAAAUAUAUUUUGCAAUGCUAAAACAAACACAUCA
(((((....-------.))))).........(((((.....((((((....))))))...................(((((((......)))))))...))))).............. ( -15.80)
>DroPse_CAF1 181373 100 - 1
UUUUUCCGCUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU-----------UUAUU--CAUAUUUCAGUGUGAAACAAAGUU-----
..((((((((.(((((.....))..(((((((.((((...(((((.....))))).)))).)))))))...-----------.....--.....))))))).)))).......----- ( -27.50)
>DroPer_CAF1 177231 98 - 1
U--UUCCGGUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU-----------UUAUU--CAUAUUUCAGUGUGAAACAAAGUU-----
.--..........(((((.(.....(((((((.((((...(((((.....))))).)))).)))))))...-----------...((--(((((....))))))).).)))))----- ( -25.40)
>consensus
UUUUUCCGAUAGAAGCUUAGGGCAAUUGUUCAUUCGGAUGAGCUGUCAAACGGCUGUCGAUUGAGCAAAAU___________UUAUU__CAUAUUUCAGUGUGAAACAAAGUU_____
.........................(((((((.((((...(((((.....))))).)))).))))))).................................................. (-10.72 = -11.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:49 2006