Locus 6189

Sequence ID 2L_DroMel_CAF1
Location 17,259,964 – 17,260,064
Length 100
Max. P 0.783853
window9890

overview

Window 0

Location 17,259,964 – 17,260,064
Length 100
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 77.10
Mean single sequence MFE -25.92
Consensus MFE -14.91
Energy contribution -16.04
Covariance contribution 1.13
Combinations/Pair 1.26
Mean z-score -2.01
Structure conservation index 0.58
SVM decision value 0.57
SVM RNA-class probability 0.783853
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17259964 100 - 22407834
CUUCCAUGACACGUGUCGUGUGGAUCACUUGCCGGCAGUCCUUUAAAAUGCGAG-------AAAUAUAAUGCUUUUAUUUGAUCUUACUUGCAUUUAAACGUGCCAC
.(((((((((....)))))).))).........((((..(.((((((.((((((-------(((((.........))))).......)))))))))))).))))).. ( -20.91)
>DroSec_CAF1 102659 107 - 1
CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUUCCUUCAAAAUGUGAGAGUUAUAAAAUAUAAUGUUUUUAUAUAAGCUCACUUGCAUUUAACCGCGCAAU
.(((((((((....))))))))).....(((((((........(((...(((((...(((((((........)))))))....)))))))).......))).)))). ( -30.76)
>DroSim_CAF1 107805 107 - 1
CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUACCUUUAAAAUGUUAUAGUUAUAAAAUAUAAUGUUUUUAUACAUGCACACUUGCAUUUAACCGCGCAAA
.(((((((((....))))))))).....(((((((.........(((((((((((.........)))))))))))..((.(((((....))))).)).))).)))). ( -30.10)
>DroEre_CAF1 102011 103 - 1
UACCCGGGACACGUGUCCUGGAGAUCACUUGC----UUUCCUUUGAAAUGUAAGAGUUGUGAAAUAUGUUGUAUUUAUUUAACCUCAUUUGCAUUAAAACGCGCCAU
...(((((((....)))))))......(((((----((((....)))).)))))...((..((....((((........))))....))..)).............. ( -21.90)
>consensus
CCUCCAUGACACGUGUCGUGGGGAUCACUUGCCGGCAUUCCUUUAAAAUGUGAGAGUUAUAAAAUAUAAUGUUUUUAUAUAAGCUCACUUGCAUUUAAACGCGCAAU
.(((((((((....)))))))))......................(((((((((.......(((((.........))))).......)))))))))........... (-14.91 = -16.04 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:45 2006