Locus 6186

Sequence ID 2L_DroMel_CAF1
Location 17,251,636 – 17,251,739
Length 103
Max. P 0.616535
window9886

overview

Window 6

Location 17,251,636 – 17,251,739
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 86.50
Mean single sequence MFE -21.42
Consensus MFE -18.14
Energy contribution -18.94
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.85
SVM decision value 0.17
SVM RNA-class probability 0.616535
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17251636 103 - 22407834
UGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUACAUUCAACGACAAACAAUGUGAAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA
.....(((((((((.((((((....))))))...............((..(((((((....))))))))))))))))))......((((......)))).... ( -22.50)
>DroSec_CAF1 94389 86 - 1
GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUUUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUA-----------------
.....(((((((((.((((((....))))))...............((((....(((....)))..))))))))))))).......----------------- ( -19.60)
>DroSim_CAF1 99350 103 - 1
GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUUUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCAGA
.((((((.....((((.((((....)))))))).))))))((....(((.(((((((.(((.(((........))).)))....))))))).)))...))... ( -20.80)
>DroEre_CAF1 93629 103 - 1
GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGUAUUGAACUGCAAACAAUGUGUAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUACGCAAUUUGGGAUCACA
((((..(((((.((.((((((....))))))((((.(((((((...(((((...(((....))).))))))).))))).....)))))))))))..))))... ( -24.80)
>DroYak_CAF1 95340 103 - 1
GGUUUGAAAUUAGCAGGCAAUUAAAAUUGCUAUAUUGAACUAUAAACAAUGUGUAAAGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA
...(((((((((((.((((((....))))))...............((((((((......))))..)))))))))))))))....((((......)))).... ( -19.40)
>consensus
GGUUGGAAAUUAGCAGGCAAUUAAAAUUGCUGCAUUCAACGACAAACAAUGUGCAUGGUGACAUUUAUUGGCUAGUUUUAAUUAUAUGCAAUUUGGUAUCACA
.....(((((((((.((((((....))))))...............(((((...(((....))).))))))))))))))........................ (-18.14 = -18.94 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:41 2006