Locus 617

Sequence ID 2L_DroMel_CAF1
Location 1,829,575 – 1,829,676
Length 101
Max. P 0.568421
window1011

overview

Window 1

Location 1,829,575 – 1,829,676
Length 101
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 89.82
Mean single sequence MFE -25.29
Consensus MFE -18.64
Energy contribution -19.57
Covariance contribution 0.94
Combinations/Pair 1.15
Mean z-score -1.61
Structure conservation index 0.74
SVM decision value 0.07
SVM RNA-class probability 0.568421
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1829575 101 + 22407834
AGCAGCUGUUGGGCCGCAGCCAUUGUUCCCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAAUGGGUGAAGAAUUAAAA-GA
..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -24.10)
>DroSec_CAF1 49607 101 + 1
AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA-GA
..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -26.60)
>DroSim_CAF1 30163 101 + 1
AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA-GA
..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).))...........-.. ( -26.60)
>DroEre_CAF1 38106 96 + 1
AGCAGCUGUUGGGCCACAGCCAUUGUUCCCA------GCAAAAAAGGAUAAAAGUGUUGAGAUUGGGAGGUGGAAGAAGCGAUGGCUGAGGAAUUAAAAAGA
..(((((((((..((((..((.....((.((------(((..............))))).))...))..))))......))))))))).............. ( -23.84)
>consensus
AGCAGCUGUUGGGCCACAGCCAUUGUUACCACUUCCCGGGAAAAAGGAUAAAAGUGCCGAGAUUGGUAGGUGGAAGCAGAAACGGGUGAAGAAUUAAAA_GA
..((.(((((.(((....))).(((((.((((((.((((......((.........))....)))).)))))).))))).))))).)).............. (-18.64 = -19.57 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006