Locus 6165

Sequence ID 2L_DroMel_CAF1
Location 17,176,665 – 17,176,785
Length 120
Max. P 0.670429
window9855

overview

Window 5

Location 17,176,665 – 17,176,785
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.11
Mean single sequence MFE -39.95
Consensus MFE -24.60
Energy contribution -24.75
Covariance contribution 0.15
Combinations/Pair 1.53
Mean z-score -1.53
Structure conservation index 0.62
SVM decision value 0.29
SVM RNA-class probability 0.670429
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17176665 120 + 22407834
GUCCGAAUGUAUGUAGCUAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUUUGGUUCUAUCACCGAUGGCCUCCAAAUGGCCAUGGUCUUGAGUGCAAUG
.......(((((....(.(((((...(((...((((((((((.....))))))))))((((((......))))))......))).((((((.......))))))))))).).)))))... ( -44.00)
>DroSec_CAF1 21617 120 + 1
GUCCGAAUGUAUGUAGCUAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCCGGGACUAUGAUCGAUGGCCUCCAAAUGGCCAUGGUCUUGAAUGCAAUG
((((.......((..((...))..))(((...((((((((((.....))))))))))))).............))))...((((.((((((.......))))))))))............ ( -39.50)
>DroSim_CAF1 22028 120 + 1
UUCCGAAUGUAUGUAGCUAGGCCGCAGGUAGGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCCGGGACUAUGACCGAUGGCCUCCAAAUGGCCAUGGUCUUGAAUGCAAUG
.......(((((....(.(((((...(((.((((((((((((.....)))))))))).)).(((((.......)))))...))).((((((.......))))))))))).).)))))... ( -43.40)
>DroEre_CAF1 20991 120 + 1
GUCCGAAUGUAUAUGGCCAGGCCGCAGGUGAAGCGAAUGUCUCGCUGGGGCAUUCUCAUCAAGUUUAUUUCUGGGUCUGUGACGGAUGGCCUCCAAAUGGCCAUCAUCUUGAAUACCAUG
...........(((((.((((((.(((((((.(.((((((((.....)))))))).).)))........)))))))))).....(((((((.......)))))))..........))))) ( -41.00)
>DroYak_CAF1 22400 120 + 1
CUCCGCAUGUUUAUGGCCAGGCCGCAGGUAAAGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCUGGAUCUCUGACCGAUGGCCUCCAAAUGGCCAUCGUCUUGAAUACCAUG
...........((((((((((((...)))...((((((((((.....)))))))))).............)))).((...(((.(((((((.......))))))))))..))...))))) ( -41.90)
>DroAna_CAF1 88802 120 + 1
UUCCGACUUUUCCGGCACAGGCCACUAACGAUGAGGAAGUCUCGCUGGCUGAUUUUCAGCAGGGUCCUUACAGUUUGCAUAUCCGACGUUCUUCAAGUUGUCCUCACCCUGCAGAGCUUG
....((((((..((((....))).(....)..)..))))))..(((...((.....))(((((((....(((..(((.....(....).....)))..)))....)))))))..)))... ( -29.90)
>consensus
GUCCGAAUGUAUGUAGCCAGGCCGCAGGUAAGGAGAAUGUCUCGCUGGGGCAUUCUCACCAAGUUUAUUUCUGGGUCUAUGACCGAUGGCCUCCAAAUGGCCAUCGUCUUGAAUACAAUG
........((((.........(((.(((((((((((((((((.....))))))))))......))))))).)))......((((.((((((.......))))))))))....)))).... (-24.60 = -24.75 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:11 2006