| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,154,977 – 17,155,073 |
| Length | 96 |
| Max. P | 0.570918 |
| Location | 17,154,977 – 17,155,073 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.73 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -12.85 |
| Energy contribution | -12.41 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17154977 96 - 22407834 GCUUCCUUUUUUUUUAGAUAAGCAACACCUGUUGCUGUUUUCAAUACGCACUGGGAGAAAAACUUCUUCCAUGUUAUUAUAUUGUUUUGUGGCAAA (((.............((..((((((....))))))....))((((.(((.((((((((....)))))))))))))))............)))... ( -22.00) >DroEre_CAF1 1073 94 - 1 GCUUCCUUU--CCUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUGGCACUGGGAGAAAAAAUGUGUAUUGGUCAGCAUAUUGUCUUGUGUCAAG .........--.....((..((((((....))))))....))..(((((((...((((...(((((((........))))))).))))))))))). ( -24.60) >DroYak_CAF1 527 75 - 1 GCCUUCUUU--UUUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUAGCACUGGGAGAAAAA-------------------UUGUUUAGUGUCAUA .........--.....((..((((((....))))))....)).....((((((((.((....-------------------)).)))))))).... ( -13.70) >consensus GCUUCCUUU__UUUUAGAUAAGCAACACCUGUUGCUGUUUUCGAUUAGCACUGGGAGAAAAA_U___U____GU_A__AUAUUGUUUUGUGUCAAA ..(((((.........((..((((((....))))))....))..........)))))....................................... (-12.85 = -12.41 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:01 2006