Locus 6151

Sequence ID 2L_DroMel_CAF1
Location 17,149,758 – 17,149,867
Length 109
Max. P 0.931144
window9830

overview

Window 0

Location 17,149,758 – 17,149,867
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -27.70
Consensus MFE -25.28
Energy contribution -25.88
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.91
SVM decision value 1.21
SVM RNA-class probability 0.931144
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17149758 109 - 22407834
AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGCCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAG-----------
....................................(((((..((((.....))))((((((((.(((..(((........)))..))))))).)))).....))))).----------- ( -23.10)
>DroSec_CAF1 110585 120 - 1
AUUUAACAUUUUUCCAACACUUUGAAAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACAUAAG
..................................((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).......... ( -28.10)
>DroSim_CAF1 122785 120 - 1
AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACGGAAG
...........((((........(.....)....((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).....)))). ( -30.80)
>DroEre_CAF1 108050 120 - 1
AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAACGUUUAACCCGCAGACAGACGCAAG
..............................((..((((((((.((((.....))))....((((.(((..(((........)))..))))))).........)))))))).....))... ( -25.80)
>DroYak_CAF1 110542 120 - 1
AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACGAAAG
............................((((..((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....))))))))..).)))... ( -30.70)
>consensus
AUUUAACAUUUUUCCAACACUUUGAUAAUCGCACUUUGCGGGCAGAUUAAUUAUUUACGAGCGGCGUGUCCUCUUCUACCUGAGUUCACUCGCAUCGUUUAACCCGCAGACAGACG_AAG
..................................((((((((.((((.....))))((((((((.(((..(((........)))..))))))).))))....)))))))).......... (-25.28 = -25.88 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:46 2006