Locus 6129

Sequence ID 2L_DroMel_CAF1
Location 17,127,223 – 17,127,343
Length 120
Max. P 0.995868
window9779

overview

Window 9

Location 17,127,223 – 17,127,343
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.00
Mean single sequence MFE -34.64
Consensus MFE -30.86
Energy contribution -32.08
Covariance contribution 1.22
Combinations/Pair 1.08
Mean z-score -2.22
Structure conservation index 0.89
SVM decision value 2.62
SVM RNA-class probability 0.995868
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17127223 120 + 22407834
UGUGGCGGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU
(((..(((((............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...)))))))))))...)))))...))).. ( -34.60)
>DroSec_CAF1 95710 120 + 1
UGUGGCAGCAAUAAUAACAGAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU
..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -33.40)
>DroSim_CAF1 107423 120 + 1
UGUGGCAGCAAUAAUAACAGAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU
..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -33.40)
>DroEre_CAF1 93154 120 + 1
UGUGGCAGCAACAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCCUGGAAAUGAAAAAUCUUUGGGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAGAACAUU
..((((((((((...........(((.....))).(((((((.(((((((..(((((.(((.........)))..)))))..)))).....))))))))))))))).)))))........ ( -35.40)
>DroYak_CAF1 93801 120 + 1
UGUGGCAGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAAGCUGCAUUUGUUGCGUGCCGAGAACAUU
..(((((((.............((((.(((...))).)))).(((((((((((.((((....))))......(((((((....)))))))...))))))))))))).)))))........ ( -36.40)
>consensus
UGUGGCAGCAAUAAUAACAAAAACGUAUUCAAUGAAAAUGUGAGCAAGUGCAGGUCGUGGAAAUGAAAAAUCUUUGAGCCCCCGCUCGAAAUGCCGCAUUUGUUGCGUGCCGAAAACAUU
..(((((((.............((((.(((...))).)))).(((((((((.((((((....))))......(((((((....)))))))...))))))))))))).)))))........ (-30.86 = -32.08 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:56 2006