| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,103,164 – 17,103,278 |
| Length | 114 |
| Max. P | 0.950068 |
| Location | 17,103,164 – 17,103,278 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.88 |
| Mean single sequence MFE | -35.23 |
| Consensus MFE | -30.10 |
| Energy contribution | -30.27 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17103164 114 - 22407834 CAAACCUCAGACGUUGCGUAUA------CGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCACACACAUUUUGAGGGAUGGGUGCG ((..(((((((...((.((...------.((((((((.((((.(((....))).))))...((((.((........))))))....))))))))...)).)).)))))))..))...... ( -35.20) >DroPse_CAF1 59482 116 - 1 CAAACCUCAGACGUUGCGUACACGAGAACGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCAC----AGUUUGAGGAAUGAGUUUG ....(((((((((((.((....))..)))((((((((.((((.(((....))).))))...((((.((........))))))....))))))))...----.)))))))).......... ( -38.40) >DroSim_CAF1 63405 114 - 1 CAAACCUCAGACGUUGCGUAUA------CGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCACACACAUUUUGAGGAAUGGGUGUG ....(((((((...((.((...------.((((((((.((((.(((....))).))))...((((.((........))))))....))))))))...)).)).))))))).......... ( -33.50) >DroEre_CAF1 68243 113 - 1 CAAACCUCAGACGUUGCGUAUA------CGUAACGUAAGCUGCUG-UACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCACACACAUUUUGAGGAACGGGUGAG ....(((((((...((.((...------.((((((((.((((.((-.....)).))))...((((.((........))))))....))))))))...)).)).))))))).......... ( -32.40) >DroYak_CAF1 68032 114 - 1 CAAACCUCAGACGUUGCGUAUA------AGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCACACACAUUUUGAGGAAUGGGUGAG ....(((((((...((.((...------.((((((((.((((.(((....))).))))...((((.((........))))))....))))))))...)).)).))))))).......... ( -33.50) >DroPer_CAF1 57845 116 - 1 CAAACCUCAGACGUUGCGUACACGAGAACGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCAC----AGUUUGAGGAAUGAGUUUG ....(((((((((((.((....))..)))((((((((.((((.(((....))).))))...((((.((........))))))....))))))))...----.)))))))).......... ( -38.40) >consensus CAAACCUCAGACGUUGCGUAUA______CGUAACGUAAGCUGCUGUUACUGCAUCAGCAACGGAAUGCCACAAAAUGCUUCCACCAUACGUUGCCACACACAUUUUGAGGAAUGGGUGUG ....(((((((((...)))..........((((((((.((((.(((....))).))))...((((.((........))))))....))))))))..........)))))).......... (-30.10 = -30.27 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:35 2006