Locus 61

Sequence ID 2L_DroMel_CAF1
Location 230,905 – 231,007
Length 102
Max. P 0.840632
window91

overview

Window 1

Location 230,905 – 231,007
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -39.12
Consensus MFE -27.61
Energy contribution -26.25
Covariance contribution -1.36
Combinations/Pair 1.30
Mean z-score -2.12
Structure conservation index 0.71
SVM decision value 0.75
SVM RNA-class probability 0.840632
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 230905 102 - 22407834
AAUCCACAGGAGUGUCUACUCCUGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCUCACAAAUCUAGUGCGCUGGAUGGGU---CCGAUA
......(((((((....)))))))...((((((((((........)))...(((....)))...((((((.(((.......))).)))))).))))---)))... ( -41.10)
>DroPse_CAF1 28778 105 - 1
AGUCGACUGGCAGUUCAACCCCGGCACCGGGCACUGCCUCGGGGAGCAACAGUGGCAACACGACCCCCGCCCACAAGUCGAGUGCUCUGGAUGGAAGUGGAGACA
.(((....((((((.....((((....)))).)))))).(((((.(.....(((....)))..)))))).((((..(((.((....)).)))....)))).))). ( -41.80)
>DroSim_CAF1 23129 102 - 1
AAUCCACAGGAGUGUCUACUCCUGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACAACUCCGGCUCACAAAUCUAGUGCGCUGGAUGGGU---CAGAUA
.(((((.((((((....))))))((((((((.......))))).)))....(((....)))...((((((.(((.......))).)))))))))))---...... ( -39.50)
>DroEre_CAF1 24093 102 - 1
AAUCCACGGGAAUGUCUACUCCAGCUCCGGGCUCCGCAUCCGGAAGCAAUAGUGGAAACACCACUCCGGCCCACAAACCUAGUGCUCUGGAUGGGU---CCGAUA
......((((....((((((...((((((((.......))))).)))...))))))....(((.(((((..(((.......)))..)))))))).)---)))... ( -33.70)
>DroYak_CAF1 25818 102 - 1
AAUCCACGGGAAUGUCUACUCCCGCUCCGGGCUCCGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCUCACAAGUCCAGUGCACUGGAUGGGU---CCGAUA
..(((((((((........))))((((((((.......))))).)))....)))))..........(((((((....(((((....))))))))).---)))... ( -38.60)
>DroPer_CAF1 29066 105 - 1
AGUCGACUGGCAGCUCAACCCCGGCACCGGGCACUGCCUCGGGGAGCAACAGUGGCAACACGACCCCCGCCCACAAGUCGAGUGCUCUGGAUGGAAGUGGAGACA
.(((....(((((......((((....))))..))))).(((((.(.....(((....)))..)))))).((((..(((.((....)).)))....)))).))). ( -40.00)
>consensus
AAUCCACAGGAAUGUCUACUCCGGCUCCGGGCUCUGCAUCCGGAAGCAAUAGUGGAAACACGACUCCGGCCCACAAAUCUAGUGCUCUGGAUGGGU___CAGAUA
.(((..(((((........)))))..((((((........((((.......(((....)))...))))))))....((((((....)))))))).......))). (-27.61 = -26.25 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:41 2006