Locus 6096

Sequence ID 2L_DroMel_CAF1
Location 17,099,246 – 17,099,351
Length 105
Max. P 0.687683
window9698

overview

Window 8

Location 17,099,246 – 17,099,351
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.24
Mean single sequence MFE -28.05
Consensus MFE -23.64
Energy contribution -23.50
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.84
SVM decision value 0.32
SVM RNA-class probability 0.687683
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17099246 105 - 22407834
UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG-
..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60)
>DroSec_CAF1 63068 105 - 1
UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG-
..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60)
>DroSim_CAF1 59270 105 - 1
UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG-
..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60)
>DroEre_CAF1 64332 105 - 1
UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG-
..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60)
>DroYak_CAF1 63470 105 - 1
UACUACUGCUGGC--------------AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG-
..........((.--------------(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))).)).- ( -27.60)
>DroPer_CAF1 54262 120 - 1
UGCUGCUGCUGGCUCUGCCACCGCGCCGUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACAGG
..(((.(((.(((.(.......).)))..(((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).))))))))))). ( -30.30)
>consensus
UACUACUGCUGGC______________AUCGUUACUGCUGCAUUUUCGACAAGUGCUUUUAACAUUAAAUAUUCAUUUACAGCAUUAAGGGCACUCGAAGUCACGCGUUAACGGUACCG_
...........................(((((((.(((((...((((((...((((((((((...(((((....))))).....)))))))))))))))).)).))).)))))))..... (-23.64 = -23.50 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:18 2006