Locus 609

Sequence ID 2L_DroMel_CAF1
Location 1,819,722 – 1,819,835
Length 113
Max. P 0.927719
window998

overview

Window 8

Location 1,819,722 – 1,819,835
Length 113
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 96.81
Mean single sequence MFE -20.00
Consensus MFE -16.16
Energy contribution -17.40
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -2.31
Structure conservation index 0.81
SVM decision value 1.19
SVM RNA-class probability 0.927719
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1819722 113 + 22407834
AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAUCAUAAUCCAUAUAAGCA
.....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.50)
>DroSec_CAF1 39703 113 + 1
AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAGAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA
.....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.60)
>DroSim_CAF1 17394 113 + 1
AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA
.....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. ( -20.50)
>DroEre_CAF1 28164 112 + 1
AUCCUCUGGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGCUGUUUGCUGAUCCCAUUCC-CAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA
.......(((((........))))).(((((((((((((((....)))))))).))((.((((((..........-)))))).))......................))))). ( -19.20)
>DroYak_CAF1 4477 111 + 1
AUCCUCUGGUGCCCAACAAAGCAUCCGUUUGGCAAAUUU--AUCUAUAAAUUUCGCUGUUUGCUGAUACCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA
.......(((((........))))).(((((((((((((--(....))))))).))((.(((((((.........))))))).))......................))))). ( -19.20)
>consensus
AUCCUCUUGUGCCCAACAAAGCAUCCGUUUGGCAAAUUUAUAUCUAUAAAUUUCGUUGUUUGCUGAUCCCAUUCCUCAGCAGUCAACCAUAAAUAACAUAAUCCAUAUAAGCA
.....((((((((.(((.........))).)))((((((((....)))))))).((((.(((((((.........))))))).))))...................))))).. (-16.16 = -17.40 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:52 2006