Locus 6085

Sequence ID	2L_DroMel_CAF1
Location	17,082,977 – 17,083,069
Length	92
Max. P	0.985617

overview

Window 1

Location	17,082,977 – 17,083,069
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	98.17
Mean single sequence MFE	-19.23
Consensus MFE	-18.02
Energy contribution	-18.22
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.83
Structure conservation index	0.94
SVM decision value	2.01
SVM RNA-class probability	0.985617
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17082977 92 + 22407834
AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80)
>DroSec_CAF1 46862 92 + 1
AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80)
>DroSim_CAF1 42415 92 + 1
AAUUUUCGGUUUUGCGAUACGCGAAGA-AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((.((-(....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -18.80)
>DroEre_CAF1 48077 93 + 1
AAUUUUCGGUUUUGCGAUACGCGAUGAAAACUUUUGCAAUCCAAUUAAAUACAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((((.......(((.....))).......))))))..((((((((...))))))))......)))).)).. ( -20.54)
>DroYak_CAF1 47250 93 + 1
AAUUUUCGGUUUUGCGAUACGCGAGGAAAACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((.(((.....(((.....))).....))).))))..((((((((...))))))))......)))).)).. ( -19.20)
>consensus
AAUUUUCGGUUUUGCGAUACGCGAAGA_AACUUUUGCAAUCCAAUUAAAUUCAUCGCAAGUCGAAAUCUCGUUUUGACAAUUUAUGCAUCCUU
.......((...((((....((((.((......(((.....)))......)).))))..((((((((...))))))))......)))).)).. (-18.02 = -18.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:59 2006