Locus 6069

Sequence ID 2L_DroMel_CAF1
Location 17,060,838 – 17,060,931
Length 93
Max. P 0.993108
window9654

overview

Window 4

Location 17,060,838 – 17,060,931
Length 93
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 80.37
Mean single sequence MFE -25.22
Consensus MFE -17.00
Energy contribution -18.69
Covariance contribution 1.69
Combinations/Pair 1.19
Mean z-score -2.73
Structure conservation index 0.67
SVM decision value 2.37
SVM RNA-class probability 0.993108
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17060838 93 + 22407834
CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGUUGG-----------GAAAGCAGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCGGCAGCGAGAAAGAU
..(((((((..(((((((((((.(((((.......(((..-----------...))).((((((....))))))..))))).))))).)))))).))))))).. ( -29.40)
>DroSec_CAF1 24921 93 + 1
CAUUUUCUCAAUUGUUGAUAAAGUUUCGAAAAAUAGUUUA-----------GAAAGCCGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU
..(((((((..((((((...(((((((........(((..-----------...))).((((((....))))))....)))))))...)))))).))))))).. ( -25.80)
>DroSim_CAF1 19736 92 + 1
CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGU-UG-----------GAAAGCCGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU
..(((((((..(((((((((((.(((((.......((-(.-----------...))).((((((....))))))..))))).))))).)))))).))))))).. ( -30.90)
>DroYak_CAF1 22586 103 + 1
CAUUCUCUCAAUUGUUUCAAAAGUUCCGAAGAAUAGUUUAGGCAUUUUUCCCAAAGCAGGCUGUAAAAAGGCCCAACAGAAAUAUGCACAUCACGG-UGAAGGU
............((((((....(((..(((((((.((....)))))))))....))).((((.......)))).....))))))..(((......)-))..... ( -14.80)
>consensus
CAUUUUCUCAAUUGUUGAUAAAGUUCCGAAAAAUAGUUUA___________GAAAGCAGGCCGUAAAAAUGGCCAAUGGAAAUUUGUCCAGCAGCGAGAAAGAU
..(((((((...((((((((((.(((((.......((((..............)))).((((((....))))))..))))).)))))).))))..))))))).. (-17.00 = -18.69 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:32 2006