Locus 6052

Sequence ID 2L_DroMel_CAF1
Location 17,036,351 – 17,036,452
Length 101
Max. P 0.677243
window9608

overview

Window 8

Location 17,036,351 – 17,036,452
Length 101
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 74.61
Mean single sequence MFE -28.43
Consensus MFE -15.82
Energy contribution -15.38
Covariance contribution -0.43
Combinations/Pair 1.35
Mean z-score -1.86
Structure conservation index 0.56
SVM decision value 0.30
SVM RNA-class probability 0.677243
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17036351 101 + 22407834
UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCCCACGGAUAUGCUUCUAUAUACAUACUAUAUACAUACAGCAUGUAC------AGUGC
...............(((((((.(((..((((((((((((((((....))))..(((......))).....))).)))))))))..)))....)))------.)))) ( -31.00)
>DroYak_CAF1 150839 107 + 1
UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCUCUCGGAGAUGCUCCUAUAUACAUACUAUAUACAUGCACCAUAUACAUAUAGAGUGC
...............((((....(((.(((((((((((((((((.....(((...)))..)))))((((((.....))))))...)).)))))))))).))).)))) ( -30.00)
>DroAna_CAF1 134555 93 + 1
UAAUUAAAAUUCUUAGCACGUAAACGGGUGUGUUUGGGCUGGGCCGAGGAGCCCGAAGAUGCUUC-----ACAUC-CACAUAUACACAAC--------AUAAAGUGC
...............((((........((((((.((((..((((......))))((((...))))-----....)-).)).))))))...--------.....)))) ( -24.29)
>consensus
UAAUUAAAAUUCUUAGCACGUAACUGGGUGUGUAUGGGUGGGGCUGUGGCCCACGGAGAUGCUUCUAUAUACAUACUAUAUACAUACAACAU_UAC__AUA_AGUGC
...............((((........(((((((((....((((....))))..(((.....))).............)))))))))................)))) (-15.82 = -15.38 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:46 2006