Locus 605

Sequence ID 2L_DroMel_CAF1
Location 1,815,761 – 1,815,864
Length 103
Max. P 0.663038
window993

overview

Window 3

Location 1,815,761 – 1,815,864
Length 103
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 88.38
Mean single sequence MFE -31.74
Consensus MFE -22.87
Energy contribution -24.03
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -1.88
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.663038
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1815761 103 + 22407834
CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUC-CCUCUCAGUGGGAUGUGAGU
((((((((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))((...((-((.......)))).))))). ( -32.30)
>DroSec_CAF1 35763 104 + 1
CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU
((((((((((((...(((((((((((((..-----------....)))))((((((...))))))...)))))))).))))))).))((...(((((.....).)))).))))). ( -31.80)
>DroSim_CAF1 13390 104 + 1
CUCGGGGAAAUUGAAAAUGAGAACGAGAAG-----------GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUGUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU
(((((((((((((((((((....(((((..-----------....)))))((((((...)))))).)))))))....))))))).))((...(((((.....).)))).))))). ( -31.60)
>DroEre_CAF1 24245 114 + 1
CUCGGGGAAAUUGAAACUGAGAACGAUAAGGAGAAGGACAAGGUCCUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUU-CCCCUCUCAGCGGGAUGUGAGU
((((((((((.((...(.((((..(((((((((((((((...)))))))(((((((...)))))).).))))))))...)))).).)).)))-))))(((.....)))...))). ( -36.80)
>DroYak_CAF1 488 97 + 1
CUCGGGGAAAUUGAAAAUGAGAGCG----------------GACCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUUCUCUCUCAGCGGGAAGUGA--
...((((((((((((((((...(((----------------((...)))))(((((...)))))..))))))))....)))))).))....((((((.......))))))...-- ( -26.20)
>consensus
CUCGGGGAAAUUGAAAAUGAGAACGAGAAG___________GUCCUUUCGCACAGCUCAGCUGUGACAUUUUUAUUAAAUUUCCGCCACUUUUCCCCUCUCAGCGGGAUGUGAGU
((((((((((((...(((((((((((((.................)))))((((((...))))))...)))))))).))))))).))((...(((((.....).)))).))))). (-22.87 = -24.03 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006