Locus 6049

Sequence ID 2L_DroMel_CAF1
Location 17,030,864 – 17,030,960
Length 96
Max. P 0.975625
window9604

overview

Window 4

Location 17,030,864 – 17,030,960
Length 96
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 87.52
Mean single sequence MFE -28.07
Consensus MFE -22.13
Energy contribution -22.63
Covariance contribution 0.50
Combinations/Pair 1.04
Mean z-score -4.12
Structure conservation index 0.79
SVM decision value 1.75
SVM RNA-class probability 0.975625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17030864 96 - 22407834
---UUCCCUUUCCA---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA
---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30)
>DroSec_CAF1 138259 96 - 1
---UUCCCUUUCCA---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA
---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30)
>DroSim_CAF1 141423 96 - 1
---UUCCCUUUCCG---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA
---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30)
>DroEre_CAF1 139758 96 - 1
---UUCCCCUACCA---------------UUCCCCUCCUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCGCAGCAAUUGAUUGCUGUGCCAAGCAAUAA
---...........---------------...........(((((((.......)))))))...........(((((((((((.(((((((....))))))))))))).))))) ( -24.40)
>DroYak_CAF1 144800 96 - 1
---UUCCCUUUCCA---------------UUCUCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCGCAGCAAUUGAUUGCUGUGCCAAGCAAUAA
---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -24.90)
>DroAna_CAF1 129256 114 - 1
CCCACCCCCCACCCUCGGGGGGUUCGUUUUUGCGCCCUCUGUGUGGGCGCCUCCUACGCAAUUAAGCUUUAUUUAUUCUCGGCCUCAGCAAUUGAUUGCUGUGCCAAGCAAUAA
...(((((((......)))))))..((....((((((.......)))))).....))((......)).....(((((((.(((..((((((....)))))).))).)).))))) ( -43.20)
>consensus
___UUCCCUUUCCA_______________UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA
........................................(((((((.......)))))))...........(((((((((((.(((((((....))))))))))))).))))) (-22.13 = -22.63 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:43 2006