Locus 604

Sequence ID 2L_DroMel_CAF1
Location 1,814,874 – 1,814,994
Length 120
Max. P 0.896566
window992

overview

Window 2

Location 1,814,874 – 1,814,994
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.01
Mean single sequence MFE -20.06
Consensus MFE -14.44
Energy contribution -15.00
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.72
SVM decision value 0.99
SVM RNA-class probability 0.896566
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1814874 120 - 22407834
GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACCUCUCCACUCCCUCCAGCACUCUCUCCACU
......(((..((((.....)))).....((((.((((......))))..)))))))((((........((((((..................)))))).......)))).......... ( -20.73)
>DroSim_CAF1 12523 101 - 1
GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACUCCUCCACUGC-------------------
......(((....((((((((((...((.(((....))).))....))))).....)))))........((((((..........))))))...)))....------------------- ( -18.60)
>DroPer_CAF1 26978 115 - 1
GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUAGUGCUGCUCCCAGAACCCGCAUGAAGUGGACAUCUCCUCCUCUUCC-AUCCUCAUCCUCAACCACAU---CCCAU
.......(((((((....(((((...((.(((....))).-))...)))))....))))))).....((((.(((.......))).)))).-....................---..... ( -20.60)
>DroEre_CAF1 23403 111 - 1
GUUUUAUGCUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACUUUUCCAC---------CACUCCCUCCACU
.....((((....((((((((((...((.(((....))).))....))))).....)))))..)))).(((((((..........)))))))......---------............. ( -20.30)
>consensus
GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACCUCUCCACU_C______CACUC___CCACU
......(((..((((.....)))).....((((.((((......))))..)))))))(((.((((.....)))).))).......................................... (-14.44 = -15.00 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006