Locus 6027

Sequence ID	2L_DroMel_CAF1
Location	16,985,511 – 16,985,640
Length	129
Max. P	0.907848

overview

Window 9

Location	16,985,511 – 16,985,605
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	96.60
Mean single sequence MFE	-20.57
Consensus MFE	-19.24
Energy contribution	-19.48
Covariance contribution	0.24
Combinations/Pair	1.05
Mean z-score	-1.40
Structure conservation index	0.94
SVM decision value	1.06
SVM RNA-class probability	0.907848
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16985511 94 - 22407834
CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA
.......((((((...(((....)))..)))))).((..((((((....(((((((......)))).)))..(((....))))))))))).... ( -21.60)
>DroSec_CAF1 93151 94 - 1
CUAUACCCGGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA
.........(((....))).((((((....((((((.(((.............))))))))).....((((.(((....))))))).)))))). ( -20.92)
>DroSim_CAF1 95113 94 - 1
CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA
.......((((((...(((....)))..)))))).((..((((((....(((((((......)))).)))..(((....))))))))))).... ( -21.60)
>DroEre_CAF1 95789 93 - 1
CCAUUCCCAGCUGUUAAGCGUGCGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGAGGAAAUGCAAAUGCAGUUU-AGCUCAA
............(((((((.(((((........)))))..........((((...((........)))))).(((....)))))))-))).... ( -17.60)
>DroYak_CAF1 95711 94 - 1
CCAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGAGGACAUGCAAAUGCAGUUUAAGCUCAA
.........(((....))).((((((....((((((.(((.............))))))))).....((((.(((....))))))).)))))). ( -21.12)
>consensus
CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA
.......((((((...(((....)))..)))))).((............(((((((......)))).)))..(((....)))......)).... (-19.24 = -19.48 +   0.24)

alignment

secondary structure

dotplot

Window 0

Location	16,985,544 – 16,985,640
Length	96
Sequences	5
Columns	96
Reading direction	reverse
Mean pairwise identity	96.67
Mean single sequence MFE	-21.35
Consensus MFE	-20.80
Energy contribution	-20.48
Covariance contribution	-0.32
Combinations/Pair	1.08
Mean z-score	-1.24
Structure conservation index	0.97
SVM decision value	0.74
SVM RNA-class probability	0.837941
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16985544 96 - 22407834
UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUCCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
((((..((((((((((..(((..((......))..))).)))((((((...(((....)))..))))))..))))))))))).............. ( -22.20)
>DroSec_CAF1 93184 96 - 1
UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCGGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). ( -21.24)
>DroSim_CAF1 95146 96 - 1
UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). ( -22.04)
>DroEre_CAF1 95821 96 - 1
UGAUGCUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUUCCCAGCUGUUAAGCGUGCGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
...(((.....((((..((.((((.((((...............))))..)))).(((((........)))))........))..))))...))). ( -20.16)
>DroYak_CAF1 95744 96 - 1
UGAUGUUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
....(((((((((((((.........))))............((((((...(((....)))..))))))..)))))))))................ ( -21.10)
>consensus
UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA
...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). (-20.80 = -20.48 +  -0.32)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:10 2006