Locus 6026

Sequence ID 2L_DroMel_CAF1
Location 16,985,323 – 16,985,413
Length 90
Max. P 0.868946
window9568

overview

Window 8

Location 16,985,323 – 16,985,413
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -27.77
Consensus MFE -19.40
Energy contribution -20.40
Covariance contribution 1.00
Combinations/Pair 1.08
Mean z-score -2.85
Structure conservation index 0.70
SVM decision value 0.86
SVM RNA-class probability 0.868946
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16985323 90 + 22407834
UCCUCUUGGGCCUCCACCGCCAUCUGUCCAACAGCUGGACUUCAUGGCCAGGACCAACACUGUGACCCACAAAAGGCACACAGCAGCAGA
.....((((.(((.....(((((..(((((.....)))))...))))).))).))))..(((((..((......))..)))))....... ( -26.20)
>DroSec_CAF1 92969 90 + 1
UUCUCUUGAACCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAGCAGUGUGACCUACAAAAGGCACACAACAGCAGA
.(((.(((....(((...(((((..((((((...))))))...)))))..)))......(((((.(((.....))))))))..))).))) ( -30.10)
>DroSim_CAF1 94929 90 + 1
UCCUCUUGGCCCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAGCAGUGUGACCUACAAAAGGCACACAACAGCAGA
..((.(((((..(((...(((((..((((((...))))))...)))))..)))...)).(((((.(((.....))))))))..))).)). ( -31.60)
>DroEre_CAF1 95605 90 + 1
ACCUCUUGGCCCUCCAUCGCCAGCUGUCCAGCAGCUGCACUUCAUGGCCAGGACCAACACUGCGACCUACAAAAGGCACACAACUGCAAA
...((((((((.......((.(((((.....))))))).......)))))))).......((.(.(((.....)))).)).......... ( -24.94)
>DroYak_CAF1 95527 90 + 1
UCCUUUUGGGUCACCAUCGCCAUCUGUCCAGCAGAUGCACUUCAUGGCCAGGACCAACACUGUGACCUACAAAAGGCACACAACGGCAAA
.(((((((((((((....((.(((((.....)))))))......(((......))).....))))))..))))))).............. ( -26.00)
>consensus
UCCUCUUGGCCCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAACACUGUGACCUACAAAAGGCACACAACAGCAGA
.....((((.(((.....(((((..(((((.....)))))...))))).))).))))...((((.(((.....))))))).......... (-19.40 = -20.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:08 2006