| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,982,520 – 16,982,614 |
| Length | 94 |
| Max. P | 0.941720 |
| Location | 16,982,520 – 16,982,614 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.08 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -12.06 |
| Energy contribution | -13.08 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16982520 94 - 22407834 AUCCCAAGCUGUC-GUGAGCAACAGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGUGGAAUACAUACAAUACAAAGAACACAC----ACACACACACA .((((....((((-((((((((.....)))).))))).)))..(((.....))).).)))........................----........... ( -19.10) >DroVir_CAF1 114007 84 - 1 -----CAGCUGUAAGUGAGCAACUGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGCAGAAU------AAUACAAAACACACAC----ACACACACGCA -----..((((((.((((((((.....)))).)))).)))...(((.....)))))).....------................----........... ( -17.90) >DroSec_CAF1 90273 84 - 1 A---------------GAGCAACAGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGUGGAAUACAUACAAUACAAAGAACACACAUACACACACACACA .---------------((((((.....)))).))..(((..(((((.....))).(((.....)))...............))..)))........... ( -11.40) >DroYak_CAF1 92040 88 - 1 AUCCCGAGUUGUA-GUGAGCAACAGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGUGGAAAACAUACAAUACAAAGAACACAC----------ACACA .....(.((((((-((((((((.....)))).))))...(((.(((.....))).))).......)))))).)...........----------..... ( -19.70) >DroMoj_CAF1 103176 84 - 1 -----GAGCUGUAAGUGAGCAGCUGAAUUGCAUCACGUACAUGGGCAAUUUGCCAACAGAAU------AAUACAAAAUACACAC----ACGCACACACA -----..((((((.((((((((.....)))).)))).))))..(((.....)))........------................----..))....... ( -17.10) >DroAna_CAF1 82592 86 - 1 AGCUCGGGCUGUAAGUGAGCAACAGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGUGGAA---AUACAAUACAAACAACACAC----ACACA------ ......(..((((.((((((((.....)))).))))...(((.(((.....))).)))...---......))))..).......----.....------ ( -18.20) >consensus A____GAGCUGUA_GUGAGCAACAGAAUUGCAUCACGUACAUGGGCAAUUUGCCAGUGGAAU__AUACAAUACAAAGAACACAC____ACACACACACA .........((((.((((((((.....)))).)))).))))..(((.....)))............................................. (-12.06 = -13.08 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:06 2006