| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,974,394 – 16,974,495 |
| Length | 101 |
| Max. P | 0.810527 |
| Location | 16,974,394 – 16,974,495 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.39 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.97 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16974394 101 + 22407834 ACACUUGAGGUUCCUUCGAGUGGAGUUUAUUAAAGAUUUCGCUCGGUUUG-CUGGGGCAUCAUAAAUACCUAUAAGG---------AUUAUUAAGUGCCUU-UCCAGCGAUU ......(((....)))((((((((((((.....))))))))))))..(((-(((((((((....(((.((.....))---------))).....)))))..-.))))))).. ( -30.90) >DroPse_CAF1 91588 111 + 1 GCACUUGAAGCGCCUUCGAGGGGAGUUUAUUAAGGAUUUGCCU-GGCAUGGUUCAGGCCUCAUAAAUACCCACAAGUACGAGUAUUAUUAUCAAGUGAUUUUCCUCACGAUG ...(((((((...)))))))(((.((((((....((...((((-((......)))))).)))))))).)))........(((.((((((....))))))....)))...... ( -24.70) >DroEre_CAF1 84692 102 + 1 ACACUCGAGGUUCCUUCGAGUGGAGUUUAUUAAAGAUUUCGCUCCGCUGG-CUGGGCCGUCAUAAAUACCUAUAAGG---------AUUAUUAAGUGCCUUUUCCAGCGAUU .(((((((((...)))))))))((((..(........)..))))((((((-..(((((...((((...((.....))---------.))))...).))))...))))))... ( -32.20) >DroYak_CAF1 83745 102 + 1 ACACUCGAGGUUCCUUCGAGUGGAGUUUAUUAAAGAUUUCGCUUGGCUUG-CAAAGGCAUCAUAAAUACCUAUAAGG---------AUUAUUAAGUGCCUUUCCCAGCGAUU .(((((((((...)))))))))................(((((.((....-.((((((((....(((.((.....))---------))).....)))))))))).))))).. ( -30.50) >DroAna_CAF1 76169 101 + 1 ACACUUGAAGCUCCAUCGAGUGGAGUUUAUUAAAGAUUUUCGCCGGCUUG--UAGGGCAUCAUAAAUACCAAUAAGU---------AAUAUUAAGUGCCUUUGCCGGCGAUU ...(((.(((((((((...)))))))))....)))....((((((((...--.(((((((......(((......))---------).......))))))).)))))))).. ( -36.82) >DroPer_CAF1 101418 111 + 1 GCACUUGAAGCGCCUUCGAGGGGAGUUUAUUAAGGAUUUGCCU-GGCAUGCUUCAGGCCUCAUAAAUACCCACAAGUACGAGUAUUAUUAUCAAGUGAUUUUCCUCACGAUU ...(((((((((((....(((.((((((.....)))))).)))-)))..)))))))).......(((((.(........).)))))........((((......)))).... ( -25.80) >consensus ACACUUGAAGCUCCUUCGAGUGGAGUUUAUUAAAGAUUUCCCUCGGCUUG_CUAAGGCAUCAUAAAUACCUAUAAGG_________AUUAUUAAGUGCCUUUCCCAGCGAUU .(((((((........((((((((((((.....))))))))))))((((.....))))................................)))))))............... (-14.85 = -15.97 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:04 2006