Locus 602

Sequence ID 2L_DroMel_CAF1
Location 1,813,594 – 1,813,729
Length 135
Max. P 0.999746
window988 window989

overview

Window 8

Location 1,813,594 – 1,813,689
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 98.60
Mean single sequence MFE -31.13
Consensus MFE -29.97
Energy contribution -30.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.63
Structure conservation index 0.96
SVM decision value 1.58
SVM RNA-class probability 0.965363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1813594 95 - 22407834
UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAA
(((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -31.90)
>DroSim_CAF1 10493 95 - 1
UUCGCUGCGAAUUUUGUGGUGGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG
(((((((((((((.((((((.(........)..)))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -29.60)
>DroEre_CAF1 22088 95 - 1
UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG
(((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -31.90)
>consensus
UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG
(((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... (-29.97 = -30.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 1,813,629 – 1,813,729
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -32.57
Consensus MFE -28.15
Energy contribution -28.02
Covariance contribution -0.12
Combinations/Pair 1.26
Mean z-score -3.31
Structure conservation index 0.86
SVM decision value 3.99
SVM RNA-class probability 0.999746
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1813629 100 - 22407834
GCGAAUCUUAGGAAUCAUUGUUUCAUCGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU
((((((.((..(((.......)))...)).))))))....(((((((((((((.((((((((........))).))))).)))))).)))))))...--------------------... ( -32.30)
>DroSim_CAF1 10528 100 - 1
GCGAAUCUUAGGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUGGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU
((((((.(((((((.......))).)))).))))))....(((((((((((((.((((((.(........)..)))))).)))))).)))))))...--------------------... ( -31.80)
>DroPer_CAF1 25551 115 - 1
--GGAUCUUAAAGA---UCGUUCCAUUCAAAUUUACAUAAUUCGUUGCAAGUUUUGGGGCCAACAUUUAACGAGCCCCACAAUUUGUCAGCGGACAGCGGACAAGGCAUUCCACAGUCCU
--.((((.....))---))........................((((((((((.(((((((..........).)))))).)))))).))))((((.(.(((........))).).)))). ( -33.60)
>DroEre_CAF1 22123 100 - 1
GCGAGUCCUAAGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU
((((((..((((((.......))).)))..))))))....(((((((((((((.((((((((........))).))))).)))))).)))))))...--------------------... ( -32.60)
>consensus
GCGAAUCUUAAGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA____________________CCU
((((((.(((((((.......))).)))).))))))....(((((((((((((.((((((((........)).)))))).)))))).))))))).......................... (-28.15 = -28.02 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:43 2006