Locus 6017

Sequence ID 2L_DroMel_CAF1
Location 16,947,200 – 16,947,306
Length 106
Max. P 0.646362
window9554

overview

Window 4

Location 16,947,200 – 16,947,306
Length 106
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 85.74
Mean single sequence MFE -30.18
Consensus MFE -21.88
Energy contribution -21.56
Covariance contribution -0.32
Combinations/Pair 1.29
Mean z-score -1.75
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.646362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16947200 106 - 22407834
AACUAU-UUGCAAAU----AUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC
......-........----.....((((..(((((((....))))))).(((((((((((((....))))))))...(((.((((.....)))).))))))))..)))).. ( -27.60)
>DroSec_CAF1 59748 106 - 1
AACUAU-UUGCAAAU----GUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC
......-..(((..(----(((.....((.(((((((....)))))))...)).((((((((....))))))))((((...((((.....))))..)))).))))..))). ( -30.40)
>DroEre_CAF1 62654 106 - 1
AACUAU-UUGCAAAU----GUUAUUAGCAUGGCGUUUCUCUGAGUGUGCUGUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC
.(((..-..(.((((----(((((....))))))))))....)))..(((((..((((((((....))))))))((.(((.((((.....)))).)))))..))))).... ( -31.50)
>DroYak_CAF1 61125 106 - 1
AACUAU-CUGCAAAU----GUUAUUGGCAAUGCAUUUUUCUGAGUGUCCUGCGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC
......-..(((..(----(((.((.(((..((((((....))))))..))).))(((((((....)))))))(((.(((.((((.....)))).))))))))))..))). ( -31.90)
>DroAna_CAF1 54993 108 - 1
---UAUAUUUCAAUUAUUUCUUUUAAAUAGGAUAUUUUUUUCACUGCCUUUUGGGCAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGAAUCGAAUGGCCAAACGACUGCC
---.(((.(((((((((.((((......))))..........((((((.....))))))..))))))))).)))((((...((((.....))))..))))........... ( -29.50)
>consensus
AACUAU_UUGCAAAU____GUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC
.........................(((..(((((((....)))))))...((.((((((((....))))))))((((...((((.....))))..))))...)))))... (-21.88 = -21.56 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:55 2006