Locus 6015

Sequence ID 2L_DroMel_CAF1
Location 16,940,515 – 16,940,605
Length 90
Max. P 0.807504
window9551

overview

Window 1

Location 16,940,515 – 16,940,605
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 86.43
Mean single sequence MFE -14.85
Consensus MFE -13.49
Energy contribution -13.05
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.61
Structure conservation index 0.91
SVM decision value 0.64
SVM RNA-class probability 0.807504
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16940515 90 - 22407834
UAAACAGCUCAAUCAAAUGGCAAGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU
.....((((..........(((((........))))).(((((..((((((.((((.....)))).)))))).....))))))))).... ( -15.60)
>DroSec_CAF1 53084 82 - 1
--------UCAAUCAAAUGGCAGGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU
--------...........(((((........))))).(((((..((((((.((((.....)))).)))))).....)))))........ ( -12.40)
>DroSim_CAF1 58202 82 - 1
--------UCAAUCAAAUGGCAGGGCAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU
--------......(((.(((...((((.....)))).(((((..((((((.((((.....)))).)))))).....))))).))).))) ( -14.30)
>DroEre_CAF1 55710 76 - 1
--------A-----GAAUGGCAAACAA-AAUGUUUGCGGUGCAUGAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU
--------.-----.....((((((..-...)))))).(((((..((((((.((((.....)))).)))))).....)))))........ ( -17.10)
>consensus
________UCAAUCAAAUGGCAAGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU
...................(((((........))))).(((((..((((((.((((.....)))).)))))).....)))))........ (-13.49 = -13.05 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006