Locus 6014

Sequence ID 2L_DroMel_CAF1
Location 16,937,080 – 16,937,190
Length 110
Max. P 0.948525
window9550

overview

Window 0

Location 16,937,080 – 16,937,190
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 70.36
Mean single sequence MFE -21.95
Consensus MFE -16.56
Energy contribution -16.28
Covariance contribution -0.28
Combinations/Pair 1.18
Mean z-score -1.18
Structure conservation index 0.75
SVM decision value 1.38
SVM RNA-class probability 0.948525
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16937080 110 - 22407834
UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUACCCAAUGUGCCCAUCACUUCCCCAUCCCCAUCCCACAUCCCA
......((((.....))))((((..((((.......))))..)))).....((((((...............(((....)))..............))))))........ ( -22.15)
>DroSec_CAF1 49719 101 - 1
UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUAGCCAAC--CCCCAUCACAUCCCCAUCCCCAUCCC-------A
......((((.....))))((((..((((.......))))..)))).....((((((.................--....................))))))-------. ( -21.19)
>DroSim_CAF1 54830 84 - 1
UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCUGGAUGCACCACUUCUACCCAAC--CCCCAUCNNN------------------------
.((((.((((........(((((..((((.......))))..)))))...)))).))))...............--..........------------------------ ( -18.90)
>DroYak_CAF1 49758 89 - 1
UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACCAUUCGGGAUGCACCAUGCCCACACUAC---------------CUAUC------CCACAUCCCA
.........(((((((..((((((.....))))))..))))))).......((((((.................---------------.....------...)))))). ( -21.61)
>DroAna_CAF1 46818 92 - 1
UUGCAAUCAGCCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUGCUCGGGCUAUGCU--UUCUCC---------CUUUCCCACUAGCAUCCCCAUCCC-------A
........((((((((..(((((..((((.......))))..))))))))).))))(((((--......---------..........))))).........-------. ( -25.89)
>consensus
UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUACCCAAC___CCCAUC_C____CCAUCCCCAUCCC_______A
.((((.(((((...)))))((((..((((.......))))..)))).........))))................................................... (-16.56 = -16.28 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006