Locus 6008

Sequence ID 2L_DroMel_CAF1
Location 16,919,458 – 16,919,556
Length 98
Max. P 0.783548
window9543

overview

Window 3

Location 16,919,458 – 16,919,556
Length 98
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 73.08
Mean single sequence MFE -27.10
Consensus MFE -16.09
Energy contribution -16.43
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -1.65
Structure conservation index 0.59
SVM decision value 0.56
SVM RNA-class probability 0.783548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16919458 98 - 22407834
UUUAAUUGAGGGCCAGUAUAGACUUCUGUGGCACCCUUAAAUA------UAGUUUGCUAAUAUGCUCUGUAAUAUUCUACCACU---GCAGUGGCCAUAGUCUACCC
.........(((......((((((...(((((.........((------(((...((......)).))))).........(((.---...))))))))))))))))) ( -22.20)
>DroSim_CAF1 36983 90 - 1
UUUAAUUGGGGGGCAGUACAGACUUCUGUGGCACCCUCAAAUG------UAGUUUG--------CUCUGUAAUGUUAUACCACU---GCAGUGGGCAUAGCCUACCC
.....(((((((((..(((((....))))))).))))))).((------((((..(--------(........))......)))---)))((((((...)))))).. ( -29.00)
>DroYak_CAF1 31979 107 - 1
UUUGAUUGAGGGCCAGUAGAGACUUCAGAGGCACCCUCAGAUAAUUUGACGUAUUUCCAAUAUGCUCUGUGAUGUUCUAUCACAUAGCCGGUAGGCAUAGCCUACCC
.....((((((((((((....))).....)))..)))))).......................(((.(((((((...))))))).))).(((((((...))))))). ( -30.10)
>consensus
UUUAAUUGAGGGCCAGUACAGACUUCUGUGGCACCCUCAAAUA______UAGUUUGC_AAUAUGCUCUGUAAUGUUCUACCACU___GCAGUGGGCAUAGCCUACCC
.....(((((((....(((((....)))))...)))))))..................................................((((((...)))))).. (-16.09 = -16.43 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:45 2006