Locus 6002

Sequence ID 2L_DroMel_CAF1
Location 16,904,474 – 16,904,594
Length 120
Max. P 0.997030
window9535

overview

Window 5

Location 16,904,474 – 16,904,594
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -40.10
Consensus MFE -36.88
Energy contribution -36.72
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -2.20
Structure conservation index 0.92
SVM decision value 2.79
SVM RNA-class probability 0.997030
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16904474 120 + 22407834
GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCAAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC
....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -41.40)
>DroSec_CAF1 17149 120 + 1
GAACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC
....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -40.70)
>DroSim_CAF1 21787 120 + 1
GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUGAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC
....................(((((...((((((..((.....((((((((.....((((((((....))...(((....)))))))))..)))))))).))..)))))).))))).... ( -40.80)
>DroEre_CAF1 19402 120 + 1
GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCAUCCUGGUAGAAACCGGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC
....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -39.70)
>DroYak_CAF1 16963 120 + 1
GCACAAUUUGUACAAUAUCCUCGACACGGAUGCCGAACUCGCCAUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUUAGUCGAAUUC
....................(((((...((((((.....(((.((((((((.....((((((.(((.(........))))...))))))..)))))))).).)))))))).))))).... ( -39.30)
>DroAna_CAF1 15047 120 + 1
GCACGAUUUGCACAAUGUCCUCCACCCGGAUGCCGAACUCUCCGUCCUGGUAGAAGCCGGGCUCGUUCGAAAUGAACAUGUUGGCCUGUAGACCGGGAUCAUCGGGCAUCAGGCGGAUGC
(((.....))).........(((.((..((((((((....)).((((((((......((((((.((((.....)))).....))))))...)))))))).....)))))).)).)))... ( -38.70)
>consensus
GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC
....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... (-36.88 = -36.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:37 2006