| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 227,842 – 227,936 |
| Length | 94 |
| Max. P | 0.887504 |
| Location | 227,842 – 227,936 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -39.75 |
| Consensus MFE | -31.60 |
| Energy contribution | -31.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 227842 94 - 22407834 UAAAAAUGACGCACAAGUCUCAGCCUCUGUUUCCU---GCGAUCCGGCCGACUC------UAGUUCACCCGAGGCGGCAGGAAAAGCUCAGGGGACGGGGGUC .......(((......)))...((((((((..(((---(.(.(((.((((.(((------..(....)..))).)))).)))....).))))..)))))))). ( -39.30) >DroSec_CAF1 20003 94 - 1 UAAAAAUGACGCACAAGUCUCAGCCUCUGUUUCCU---GCGAUCCGGCCGACUC------CAGUUUAUCCGAGGCGGCAGGAAAAGCUCAGGGGACGGGGGUC .......(((......)))...((((((((..(((---(.(.(((.((((.(((------..........))).)))).)))....).))))..)))))))). ( -38.60) >DroSim_CAF1 20121 94 - 1 UAAAAAUGACGCACAAGUCUCAGCCUCUGUUUCCU---GCGAUCCGGCCGACUC------UAGUUCAUCCGAGGCGGCAGGAAAAGCUCAGGGGACGGGGGUC .......(((......)))...((((((((..(((---(.(.(((.((((.(((------..........))).)))).)))....).))))..)))))))). ( -39.10) >DroEre_CAF1 21076 94 - 1 UAAAAAUGACGCGCAAGUCUCAGCCUCUGUUUCCU---GCGAUCCGGCCGACUC------UAGUUCGCCGGAGGCGUCAGGAAAAGUUCAGGGAACGGGGGUC ......(((.((....)).)))(((((((((((((---((..((((((.(((..------..))).)))))).))....(((....)))))))))))))))). ( -41.70) >DroYak_CAF1 22712 94 - 1 UAAAAAUGACGCGCAAGUCUCAGCCUCUGUUUCCU---GCGAUCCGGUCGACUC------UAGUUCGGCGGAGGUGUCAGGAAAAGUUCAGGGAACGGGGGCC ......(((.((....)).)))(((((((((((((---(...(((.(.((.(((------(........)))).)).).)))......)))))))))))))). ( -36.70) >DroAna_CAF1 26265 100 - 1 UAAAAAUGAUGCAACAGUCUCUGCCUCUGGCUCCUCCGGUGAUCCGGCCGACUCCUCUUCCAGUUCGCAAGAGGUCGGUGGCCAGGC---GGAGGCGGAGGUC .......(((......)))...(((((((.((((.((((....))(((((...((((((.(.....).))))))....))))).)).---)))).))))))). ( -43.10) >consensus UAAAAAUGACGCACAAGUCUCAGCCUCUGUUUCCU___GCGAUCCGGCCGACUC______UAGUUCACCCGAGGCGGCAGGAAAAGCUCAGGGGACGGGGGUC .......(((......)))...(((((((((((((...((..(((.((((.(((................))).)))).)))...))..))))))))))))). (-31.60 = -31.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:39 2006