Locus 6

Sequence ID 2L_DroMel_CAF1
Location 26,075 – 26,165
Length 90
Max. P 0.990338
window10

overview

Window 0

Location 26,075 – 26,165
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -22.77
Consensus MFE -12.67
Energy contribution -13.48
Covariance contribution 0.81
Combinations/Pair 1.26
Mean z-score -2.59
Structure conservation index 0.56
SVM decision value 2.21
SVM RNA-class probability 0.990338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 26075 90 - 22407834
UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACACACCAAGAACGCAU
......--------((((..((((((((---(((((((..--........-................))))))).))).....((....)))))))..)))).. ( -21.67)
>DroSec_CAF1 4128 90 - 1
UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAGCGCAU
......--------((((..((((((((---(((((((..--........-................))))))).))).....(....)..)))))..)))).. ( -21.57)
>DroSim_CAF1 4113 90 - 1
UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAGCGCAU
......--------((((..((((((((---(((((((..--........-................))))))).))).....(....)..)))))..)))).. ( -21.57)
>DroEre_CAF1 3966 90 - 1
UAAAAA--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUCUCUGAAUGUUUUGGAUGCAUCAAAUCCACACACCAAUAACGCAU
......--------((((.(((((((..---..(((..((--(.......-...)))..))).........(((((.......)))))..))))))).)))).. ( -22.70)
>DroYak_CAF1 3810 91 - 1
AAAAAA-------GGCGUAAUUGGUGCA---UCGAGUCCU--UGAACAUA-AUAAAAUUCUCAGUAUGAUUUGGAUGCAUUAAGUCCACACACCAAGAGCGCAU
......-------.((((..((((((..---((((....)--))).....-....................(((((.......)))))..))))))..)))).. ( -21.00)
>DroPer_CAF1 3915 99 - 1
UACUAAUAAAUUGUGCGUGGUUGGCAGCCCUUUGGGUCCUUUUUAAAAUGCAUGAGUAG-GCAAGAGGAUUGGGAAGG----AAGCCAGAAAGCCAGAAAGCAU
............((((.((((((((..((.(((.(((((((((.....(((....))).-..))))))))).))).))----..))))....))))....)))) ( -28.10)
>consensus
UAAAAA________GCGUAAUUGGUGCA___CCGAGUCUU__UGAAAAUA_AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAACGCAU
..............((((..((((((((...(((((((.............................))))))).))))))))...............)))).. (-12.67 = -13.48 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:05 2006