Locus 5986

Sequence ID 2L_DroMel_CAF1
Location 16,868,819 – 16,868,911
Length 92
Max. P 0.500000
window9509

overview

Window 9

Location 16,868,819 – 16,868,911
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -19.15
Consensus MFE -9.95
Energy contribution -10.62
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.52
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16868819 92 - 22407834
---------------UCAAAGGAUAGCGG----------UCCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA
---------------.....((((....)----------)))(((((.((((........---..(((((.((((((....))))))...))))))))).)))))............... ( -17.00)
>DroVir_CAF1 22407 102 - 1
CUUCCCUUUUGGUCAUCAAAGGAUCGCCGC---------GCCGCACUAAUAAGUUUUCAA---------GAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUC
..........(((.(((....))).)))..---------...(((((.(((((..(.((.---------..((((((....)))))).)).)..))))).)))))............... ( -19.30)
>DroPse_CAF1 31123 102 - 1
---------------UCAAAGGAUGGCCGAGCGAGAGCGGGCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA
---------------.....(.((((((..((....)).)))(((((.((((........---..(((((.((((((....))))))...))))))))).))))).....))).)..... ( -23.60)
>DroWil_CAF1 28167 92 - 1
---------------UCAAAGGCUCGCCG-------------GCACUAAUAAGUUUUCGAGCACAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUC
---------------......(((((..(-------------((........)))..)))))..((((((.((((((....))))))...))))))......((((......)))).... ( -18.30)
>DroYak_CAF1 3568 86 - 1
---------------UCAAAGGAUAGCGG----------GCCGCACUAAUAAGUUUUAAG---AAAAAU------GAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA
---------------..........(((.----------...(((((.(((((.......---..((((------((....)))))).......))))).))))).......)))..... ( -13.09)
>DroPer_CAF1 33296 102 - 1
---------------UCAAAGGAUGGCCGAGCGAGAGCGGGCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA
---------------.....(.((((((..((....)).)))(((((.((((........---..(((((.((((((....))))))...))))))))).))))).....))).)..... ( -23.60)
>consensus
_______________UCAAAGGAUAGCCG__________GCCGCACUAAUAAGUUUUAAG___AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA
..........................................(((..........................((((((....)))))).(((((((....)))))))......)))..... ( -9.95 = -10.62 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:12 2006