Locus 598

Sequence ID 2L_DroMel_CAF1
Location 1,810,179 – 1,810,295
Length 116
Max. P 0.559049
window983

overview

Window 3

Location 1,810,179 – 1,810,295
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -25.87
Consensus MFE -17.02
Energy contribution -16.81
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 0.05
SVM RNA-class probability 0.559049
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1810179 116 - 22407834
GACGACAUUGUUUCGUUUAUCGUCAACUUUUCCUUAUUUUCUCCCAGCUAAGCUAAGAUUUCUCCUUGUGCCAAAGUCUUCUUUUUGUCUUGUCUGGAAAUGAGAAAAAGCGAUAC
(((((.......)))))(((((....(((((.(((((((....((((.((((.(((((......(((......)))......))))).)))).))))))))))).)))))))))). ( -22.30)
>DroSim_CAF1 7092 109 - 1
GCCGUCAUUGUUUCGUUUAUCGCGAAGUUUUCCUUAUUUUCUCCCA----UGCU---AUGUCUCCUUGUCACAAAGUCUUCUUUUUGUCUUGUCUGAAAAUGAGGAAAAGCGAUAC
.................((((((....((((((((((((((.....----....---..(.(.....).)((((((......)))))).......)))))))))))))))))))). ( -23.40)
>DroEre_CAF1 14471 114 - 1
AAGGACAUUGUUUUGUUUAUCGCGAACUUUUCUUUAUUUUCUCCCAGCUAAGCUGAGAUUUCCUCUCGCCAGAAAGUCUU--UUUUGUCUUGUCUGGAAAUGAGGAAAAGCGAUUG
..(((((......)))))(((((..................((.((((...)))).))(((((((...((((((((.(..--....).))).)))))....))))))).))))).. ( -31.90)
>consensus
GACGACAUUGUUUCGUUUAUCGCGAACUUUUCCUUAUUUUCUCCCAGCUAAGCU_AGAUUUCUCCUUGUCACAAAGUCUUCUUUUUGUCUUGUCUGGAAAUGAGGAAAAGCGAUAC
.................((((((....((((((((((((((..........((..............))....(((.(........).)))....)))))))))))))))))))). (-17.02 = -16.81 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:37 2006