Locus 5973

Sequence ID 2L_DroMel_CAF1
Location 16,835,179 – 16,835,291
Length 112
Max. P 0.525063
window9489

overview

Window 9

Location 16,835,179 – 16,835,291
Length 112
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 84.15
Mean single sequence MFE -32.82
Consensus MFE -22.75
Energy contribution -23.76
Covariance contribution 1.01
Combinations/Pair 1.37
Mean z-score -2.03
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.525063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16835179 112 + 22407834
ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUCUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAGGGCAGGA-CCAAAGGUAAGAU
...((((((((..(((((((......))........(((((..((((((((((((((((....))))....)))))..)))))))....))))))))))-))))))))..... ( -34.70)
>DroSec_CAF1 31984 112 + 1
ACCACCUUUGGCAUCCUGGCCAUUCUGCUUUUCUUCCUCUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAGGGCAGGA-UCAAAGGUAAGUU
...(((((((..((((((((......))........(((((..((((((((((((((((....))))....)))))..)))))))....))))))))))-))))))))..... ( -32.50)
>DroEre_CAF1 30114 110 + 1
ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAUGGUCCUUAG--CGGAA-CAAAAGGUAAGAC
........((((......)))).........(((((((((...((((((((((((((((....))))....)))))..)))))))(((....--.))).-..))))).)))). ( -27.20)
>DroYak_CAF1 27876 112 + 1
ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAAGGUCCUUAGGGCAGGA-CAGAAGGUAAGAC
...(((((((((......))).(((((((((....(((((..((......(((((((((....))))....)))))))..))))).....)))))))))-..))))))..... ( -33.90)
>DroAna_CAF1 31728 111 + 1
ACCACCUUCGGCAUCCUGGCCGUUCUGCUGUUCUUCCUUUACAUCAUUUAUGCCGUAUUGUAGACU-UUUAUGGCCAGAAUAAGGUCUUUGGAGCAGGA-UAUGAGGUAUAAA
...(((((.(((......)))((((((((.(....((((......((((..((((((..(....).-..))))))..)))))))).....).)))))))-)..)))))..... ( -28.90)
>DroPer_CAF1 29398 112 + 1
ACCACCUUCGGCAUCCUGGCCUUCCUGCUCUUCUGCCUGUACCUCAUCUAUGCAGUAUUGUAGACUGC-CAGGGCCACUAGGAGGUCCUUUGAGCAGGAAUAUGGGGUAAGAC
(((.((...(((......)))(((((((((.(((((..((((..((....))..)))).)))))....-.((((((.......))))))..)))))))))...)))))..... ( -39.70)
>consensus
ACCACCUUUGGCAUCCUGGCCAUCCUGCUUUUCUUCCUUUACCUCAUCUAUGCCGUAUUGUAAAAUGUUUCCGGCAAGUAGAAGGUCCUUAGGGCAGGA_CAAAAGGUAAGAC
...(((((((((......))).(((((((((....(((((((........(((((................))))).))))).)).....)))))))))...))))))..... (-22.75 = -23.76 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:53 2006