| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,809,732 – 1,809,824 |
| Length | 92 |
| Max. P | 0.531277 |
| Location | 1,809,732 – 1,809,824 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 82.79 |
| Mean single sequence MFE | -17.02 |
| Consensus MFE | -9.84 |
| Energy contribution | -10.90 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1809732 92 - 22407834 UACAAUUACCAAAUUAAUUUACAUGACUGCGGCCUCGAGAAACAAUUAAAAAGUUGGCAAAGUUUGAGGCUAAGCAAACAAAUGUAGAGGGA ........((.......(((((((...((((((((((((...(((((....)))))......)))))))))..))).....))))))).)). ( -22.40) >DroSim_CAF1 6667 92 - 1 UACAAUUACCAAAUUAAUUUACAUGACUGCGGCCUCGAGAAACAAUUAAAAAGUUAGCAAAGUUUGAGGCUAAGCAAACAAAUGUAGAGGCA .................(((((((...((((((((((((......((((....)))).....)))))))))..))).....))))))).... ( -18.50) >DroPer_CAF1 20530 86 - 1 UACAAUUACCAAAUUAAUUUACAU--CUCAGAACUUGAGAAACAAUUAAAAAGUUAAGAAACUAUCAGCCCAA----AAUGGUAUAAAUUGA ..(((((((((..((((((....(--(((((...))))))...))))))..((((....))))..........----..)))))...)))). ( -12.00) >DroEre_CAF1 13968 92 - 1 UACAAUUACCACAUUAAUUUACAUGACUGCGGCCUCGAGAAACAAUUAAAAAGUUAGCAAAGUUUGAGCCCAAGCAAACAAAUGUGGAGGGU ........(((((((........((..(((((.((((((......((((....)))).....)))))).))..)))..)))))))))..... ( -15.20) >consensus UACAAUUACCAAAUUAAUUUACAUGACUGCGGCCUCGAGAAACAAUUAAAAAGUUAGCAAAGUUUGAGCCCAAGCAAACAAAUGUAGAGGGA .................(((((((...((((((((((((......((((....)))).....)))))))))..))).....))))))).... ( -9.84 = -10.90 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006