Locus 5966

Sequence ID 2L_DroMel_CAF1
Location 16,790,157 – 16,790,256
Length 99
Max. P 0.541505
window9481

overview

Window 1

Location 16,790,157 – 16,790,256
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 71.63
Mean single sequence MFE -31.73
Consensus MFE -14.99
Energy contribution -13.39
Covariance contribution -1.60
Combinations/Pair 1.65
Mean z-score -1.62
Structure conservation index 0.47
SVM decision value 0.02
SVM RNA-class probability 0.541505
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16790157 99 + 22407834
UAAUCAAAUGAUCGGAGUUCACUUCGUGUUUUUGUUGCUUCUCGGCGUGGUUGCCUCCACCCAGGGAGCUAACAUUUUGGGGCUCUUCAGCAGUCACAG
........(((..(((((((.(...(((((......(((((..((.((((......))))))..))))).)))))...))))))))))).......... ( -28.40)
>DroPse_CAF1 14213 95 + 1
----AAAAUGUUAGCAGUCCGCUCCAUAUUUUUAUUGCUAGCUACGUUAGCGGUGUGCGCUCGCGGAGCGAACAUUUUGGGACUGUUCAGCAGUCACAG
----....(((((((((((((((((.......((((((((((...)))))))))).((....)))))))...(.....))))))))).))))....... ( -34.50)
>DroEre_CAF1 12591 99 + 1
GCUCAAAAUGAUUGGGAUGCGCUGCGUACUUGUGUUGCUACUCGGAGUGGUGGCCACCACCCAGGGAGCCAACAUUUUGGGGCUCUUCAGCAGCCACAG
.(((((.....))))).((.(((((((((....).)))..(((((((((.((((..((.....))..)))).)))))))))........)))))))... ( -32.90)
>DroYak_CAF1 13157 99 + 1
UAUUAAAAUGAUCGGGGUCCGCUGCGUACUUUUGUUGCUACUCGGUGUGGUGGCCUCCACCCAUGGAGCUAACAUUUUGGGGCUCUUCAGCAGCCACAG
........(((..(((((((((.(((......))).))..(((.(((.(((((...)))))))).)))...........)))))))))).......... ( -29.40)
>DroAna_CAF1 11253 97 + 1
--CCAAAAUGUUGGUGGCUCGCCCCGUAAUUUUGCUGUUGGCUAUUUUGAUAGCCUCCUCGAAUGGAGCCAAUAUUUUGGGACUGUUCAGCAGUCACAG
--(((((((((((((((....))((((....(((..(..((((((....))))))..).))))))).)))))))))))))(((((.....))))).... ( -35.70)
>DroPer_CAF1 14078 95 + 1
----AAAAUGUUAGCAGUCCGCUCCAUAUUUUUAUUACUAGCUACUUUAGCGGUGUGCGCUCGCGGAGCGAACAUUUUGGGACUGUUUAGCAGUCACAG
----....(((((((((((((((((..........((((.((((...)))))))).((....)))))))...(.....))))))).))))))....... ( -29.50)
>consensus
____AAAAUGAUAGGAGUCCGCUCCGUAUUUUUGUUGCUACCCAGUGUGGUGGCCUCCACCCACGGAGCCAACAUUUUGGGACUCUUCAGCAGUCACAG
........((...((((((((((((........((((((((.....))))))))..........)))))...(.....))))))))....))....... (-14.99 = -13.39 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006