Locus 5964

Sequence ID 2L_DroMel_CAF1
Location 16,782,560 – 16,782,680
Length 120
Max. P 0.876920
window9478

overview

Window 8

Location 16,782,560 – 16,782,680
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.94
Mean single sequence MFE -43.18
Consensus MFE -39.96
Energy contribution -39.27
Covariance contribution -0.69
Combinations/Pair 1.12
Mean z-score -1.25
Structure conservation index 0.93
SVM decision value 0.90
SVM RNA-class probability 0.876920
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16782560 120 + 22407834
AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCUCAGCAGGAGCUUGAGGAGGCCGAGGAGCGCGCCGAUCUGGCCGAGCAG
.............((((((((((((.(((.((.....)))))..))))..(((((((....(((...((((((.....))))))..)))))))))).........))))).)))...... ( -48.50)
>DroVir_CAF1 2841 120 + 1
AAGACAUACAAGAGGCAGAUCGAGGAAGCCGAGGAAAUCGCUGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG
............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -40.40)
>DroGri_CAF1 2951 120 + 1
AAGACAUACAAGAGGCAGAUCGAGGAGGCCGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG
............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -42.40)
>DroWil_CAF1 2257 120 + 1
AAGACAUACAAGAGGCAGAUUGAGGAAGCCGAGGAAAUCGCUGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG
............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... ( -37.50)
>DroMoj_CAF1 2826 120 + 1
AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAACAG
............((.(((((((.(.(.(((((((..........))))..((((((....((((....(((((....)).)))...)))))))))).))).).)))))))).))...... ( -42.50)
>DroAna_CAF1 2792 120 + 1
AAGACAUACAAGAGGCAGAUCGAGGAGGCUGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCUCAGCAGGAGCUGGAGGAGGCCGAGGAGCGUGCCGAUCUGGCCGAGCAG
.............(((((((((.(.(.(((((((..........))))..(((((((.....((....))((((((....))).)))..))))))).))).).))))))).)))...... ( -47.80)
>consensus
AAGACAUACAAGAGGCAGAUCGAGGAGGCCGAGGAAAUCGCCGCCCUCAACUUGGCCAAAUUCCGCAAGGCCCAGCAGGAGCUCGAGGAAGCCGAGGAGCGUGCCGAUCUGGCUGAGCAG
............((.((((((((((.(((.((.....)))))..))))..((((((....((((....(((((....)).)))...)))))))))).........)))))).))...... (-39.96 = -39.27 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:42 2006