Locus 5960

Sequence ID 2L_DroMel_CAF1
Location 16,779,511 – 16,779,616
Length 105
Max. P 0.938827
window9471

overview

Window 1

Location 16,779,511 – 16,779,616
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.08
Mean single sequence MFE -33.93
Consensus MFE -26.66
Energy contribution -26.47
Covariance contribution -0.19
Combinations/Pair 1.09
Mean z-score -2.28
Structure conservation index 0.79
SVM decision value 1.30
SVM RNA-class probability 0.938827
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16779511 105 + 22407834
CUAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAGCAGGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAUUGCG-------------AAUAUUAU--UAGACU
.((((((((((.....))....((..((((((.....)))))))).)))))))).((((((.....)))))).((((((...(((((....-------------.))))).)--))).)) ( -32.90)
>DroVir_CAF1 9633 109 + 1
CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCUGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUCC------AA-UUGAUCUCUC--UAGA--
.(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))((..(((..............------..-)))..))...--....-- ( -29.39)
>DroGri_CAF1 9831 112 + 1
CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUCACUCUCUUU-CCGCA---CA--UAGA--
.(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....)))))).((..(((..(((.......)))..))).-))...---..--....-- ( -31.90)
>DroWil_CAF1 9232 115 + 1
CCAACCUGCGCAAGAAGCACAACGAUGCUGUCGCUGAGAUGGCCGAGCAAGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAGAACGGGCG----GGUUGGAUAUCUUGGCUGAA-
(((((((((.(..((((((......)))).))(((....(((((.(((..(((((.....)))))..)))...)))))....))).....).)))----))))))..............- ( -39.10)
>DroMoj_CAF1 9828 110 + 1
CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAGAAUACC-----UCA-ACGAACUAUC--UAGA--
.(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))......(((..((.((.....-----)).-))..)))...--....-- ( -30.90)
>DroAna_CAF1 9343 105 + 1
CUAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAGCAGGUUGAUCAGCUCAACAAGCUGAAGGCUAAGUAAGUAUCCUU-------------UUUAUUUA--AAGCCA
.((((((((((.....))....((..((((((.....)))))))).)))))))).((((((.....)))))).((((...((((((.....-------------..))))))--.)))). ( -39.40)
>consensus
CCAACCUGCGCAAGAAGCACAACGAUGCCGUCGCCGAGAUGGCCGAACAGGUUGAUCAGCUCAACAAGCUGAAGGCCAAGUAAGUAAAAUUC____________GAUAUCUA__UAGA__
.(((((((.((.....))....((..((((((.....))))))))..))))))).((((((.....))))))................................................ (-26.66 = -26.47 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:34 2006