Locus 596

Sequence ID 2L_DroMel_CAF1
Location 1,809,480 – 1,809,582
Length 102
Max. P 0.991236
window981

overview

Window 1

Location 1,809,480 – 1,809,582
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 69.62
Mean single sequence MFE -22.67
Consensus MFE -16.80
Energy contribution -18.42
Covariance contribution 1.63
Combinations/Pair 1.36
Mean z-score -1.75
Structure conservation index 0.74
SVM decision value 2.26
SVM RNA-class probability 0.991236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1809480 102 + 22407834
ACACUACGCAUUUGUCGAAUGUAUUUCUCUAUGAAAUUCGAUUGGCAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC--------------U----
..........((((((((.((.(((((.....))))).)).))))))))...((((...(((((((((.....................))))))))))))--------------)---- ( -24.30)
>DroSim_CAF1 6412 103 + 1
ACACUACGCAUUUGUCGAAUGUAUUUCUCUAUGAAAUACAA---ACAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC--------------ACGAA
..............(((..((((((((.....)))))))).---.........(((...(((((((((.....................))))))))))))--------------.))). ( -23.30)
>DroPer_CAF1 20240 117 + 1
AAACUGCGCAAUUUCCAUGUUUAUUUCCCUGGGAAGUACUCCGGGAAAACA---CGAAAGCCCCAAUGAAAACUCCGCUACACACAGACCUUUGUGGUUCUUUUGCUUUGGUUCUUUGAU
.....(((...(((.(((.....((((((.(((.....))).))))))...---(....).....))).)))...)))....((.(((((...(..(.....)..)...)).))).)).. ( -21.70)
>DroEre_CAF1 13707 102 + 1
ACACUGCGCAUCUUUCAAAUGAAUUUUUCUAUGAAAUUCGCUUGG----CAAAGGAAAAGCCACGAGGAAAACUACCCAACAAACAAACCUUUGUGGUUUC--------------AGGAA
...(((....((((((((.((((((((.....)))))))).))))----...)))).(((((((((((.....................))))))))))))--------------))... ( -21.40)
>consensus
ACACUACGCAUUUGUCAAAUGUAUUUCUCUAUGAAAUACGAUUGGCAAACAAAGGAAAAGCCACGAGGAAAACUGCACAACAAACAAACCUUUGUGGUUCC______________A_GAA
...........(((((((.((((((((.....)))))))).)))))))..........((((((((((.....................))))))))))..................... (-16.80 = -18.42 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:35 2006