Locus 5951

Sequence ID 2L_DroMel_CAF1
Location 16,774,358 – 16,774,453
Length 95
Max. P 0.647501
window9456

overview

Window 6

Location 16,774,358 – 16,774,453
Length 95
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 76.36
Mean single sequence MFE -28.30
Consensus MFE -18.14
Energy contribution -18.03
Covariance contribution -0.11
Combinations/Pair 1.30
Mean z-score -1.30
Structure conservation index 0.64
SVM decision value 0.24
SVM RNA-class probability 0.647501
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16774358 95 - 22407834
-------------UUGAAACGUU----UAUAUGCCUUGGUGUGUCCAAUGCGAUACAUAUCGGGAUCCAAUGCGGUGGAUUCCAAAAUGAUGGAUCCACACUUUUUGGGAUC
-------------..........----......(((.((((((((((....(((....)))((((((((......)))))))).......))))..))))))....)))... ( -26.90)
>DroVir_CAF1 4322 108 - 1
AGGUCAAGAAUCUGUGGAACGCG----ACUAUGCCUUAGUGUGUCCAAUACGAUACAUAUCGGGAUCCAAUGUUGUGGAUUCCAAUAUAAGUGAGCCACACUUCUUGGGAUC
...(((((((..(((((..(((.----...........(((((((......)))))))...((((((((......)))))))).......)))..))))).))))))).... ( -36.20)
>DroPse_CAF1 4380 95 - 1
-------------UCGGAACAAG----ACUCUGCCUUGGUGUGUCCAAUGCGGUACAUAUCGGGAUCCAGUCCAGUGGAUUCUAGAAGUAUGCUGCCACACUUCUUCGCAUC
-------------...(((.(((----.....((.((((.....)))).))(((((((((.((((((((......))))))))....))))).))))...))).)))..... ( -26.50)
>DroWil_CAF1 4184 99 - 1
-------------UUGGAAUAUAUCAAUAUGUGCCUUUGUGUGUCCAAUACGAUACAUAUCGGGAUCCAAUGAGGUGGAUUCCAAUAGAAUACUGCCACAUUUCUUAGGAUC
-------------....................((..((((((((......))))))))..))(((((((((.((..(((((.....)))).)..)).)))).....))))) ( -25.30)
>DroAna_CAF1 4117 95 - 1
-------------UCGGAACGUG----ACCCUGCCUUGGUGUGUCCAAUGCGGUACAUGUCGGGAUCCAAUGUGGUGGAUUCCAAAAUAAGCGCGCCACACUUCUUGGGAUC
-------------..((..((((----((.((((.((((.....)))).)))).....)))((((((((......)))))))).......)))..))............... ( -28.40)
>DroPer_CAF1 4590 95 - 1
-------------UCGGAACAAG----ACUCUGCCUUGGUGUGUCCAAUGCGGUACAUAUCGGGAUCCAGUCCAGUGGAUUCUAGAAGUAUGCUGCCACACUUCUUCGCAUC
-------------...(((.(((----.....((.((((.....)))).))(((((((((.((((((((......))))))))....))))).))))...))).)))..... ( -26.50)
>consensus
_____________UCGGAACAUG____ACUCUGCCUUGGUGUGUCCAAUGCGAUACAUAUCGGGAUCCAAUGCGGUGGAUUCCAAAAGAAUGCUGCCACACUUCUUGGGAUC
.................................(((.((((((........(((....)))((((((((......)))))))).............))))))....)))... (-18.14 = -18.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:19 2006