| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,773,887 – 16,773,998 |
| Length | 111 |
| Max. P | 0.555490 |
| Location | 16,773,887 – 16,773,998 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.94 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -22.13 |
| Energy contribution | -22.52 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16773887 111 - 22407834 GAACCUUGGAGGCUUUCUUGGGACAAUCGAGGUCCUUAAUGCCACGGGGGUUCAGGAUCUGGUACCUGUCAGGAUGUAGA---G------UUCGUUUUUGAUUCCAUACUCAGAAAAAAU (((((((.(.(((......(((((.......)))))....))).).)))))))....(((((((...(((((((((....---.------..)).)))))))....))).))))...... ( -32.80) >DroPse_CAF1 3847 117 - 1 GAACCUUGGAGGCUUUCUUGGGAUCUUCGAGAUCCUUAAUGCCGCGGGGGUUCAGAAUUUGGUACCUGUCGGAAUGUAGA---AUUUCGGUUCGAUUUGAGAUGUAUGUACAUAAAAAAC (((((((.(.(((......((((((.....))))))....))).).)))))))........((((...(((((((.....---)))))))(((.....)))......))))......... ( -32.90) >DroGri_CAF1 3770 108 - 1 GAACCUUGGAGGCUUUCUUUGGAUCUGAAAGGUCCUUAAUACCGCGUGGGUUCAAAAUCUGGUACCUGUUCACAUAAAUACACA------UUCAUUUUUGAGAC-----AAAAACAACA- ((((...((..(((...((((((((((...(((.......)))...))))))))))....))).)).)))).............------((((....))))..-----..........- ( -19.00) >DroEre_CAF1 3505 111 - 1 AAACCUUGGAGGCUUUCUUGGGACACUCGAGGUCCUUAAUGCCACGGGGGUUCAGAAUCUGGUACCUGUCAGGAUGUAGA---G------UUCGUUUUUGAUUCCAUACUCAGAAUAAAU .((((((.(.(((......(((((.(....))))))....))).).)))))).....(((((((...(((((((((....---.------..)).)))))))....))).))))...... ( -28.70) >DroAna_CAF1 3610 117 - 1 GAACCUUGGAGGCUUUCUUGGGAUCAUCGAGAUCCUUAAUGCCACGGGGGUUCAGAAUCUGGUACCUGUCGGAAUGUAGA---AUAUUUUUUCGUUUUUUGAUUCGUGCUCAAAAAAACA (((((((.(.(((......((((((.....))))))....))).).)))))))......((((((..(((((((....((---(......)))...)))))))..)))).))........ ( -36.40) >DroPer_CAF1 4057 117 - 1 GAACCUUGGAGGCUUUCUUGGGAUCUUCGAGAUCCUUAAUGCCGCGGGGGUUCAGAAUUUGGUACCUGUCGGAAUGUAGA---AUUUCGGUUCGAUUUGAGAUGUAUGUACAUAAAAAAC (((((((.(.(((......((((((.....))))))....))).).)))))))........((((...(((((((.....---)))))))(((.....)))......))))......... ( -32.90) >consensus GAACCUUGGAGGCUUUCUUGGGAUCUUCGAGAUCCUUAAUGCCACGGGGGUUCAGAAUCUGGUACCUGUCGGAAUGUAGA___A______UUCGUUUUUGAAUCCAUGCACAAAAAAAAC (((((((.(.(((......((((((.....))))))....))).).)))))))....(((((......)))))............................................... (-22.13 = -22.52 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:18 2006