Locus 595

Sequence ID 2L_DroMel_CAF1
Location 1,807,679 – 1,807,771
Length 92
Max. P 0.790460
window980

overview

Window 0

Location 1,807,679 – 1,807,771
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -21.07
Consensus MFE -15.10
Energy contribution -14.00
Covariance contribution -1.10
Combinations/Pair 1.32
Mean z-score -2.03
Structure conservation index 0.72
SVM decision value 0.58
SVM RNA-class probability 0.790460
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1807679 92 - 22407834
GCUAAACUGAAUUGCCUAAGUUUUUCACGCUCGAUUGGUGAAUCAAAAAAUUUCCACAUGCGAUUGAAAAAUCGCUUACAAUUCGAACUGAU
.......(((((((.........(((((.(......)))))).................((((((....))))))...)))))))....... ( -18.20)
>DroSim_CAF1 4330 92 - 1
GCUAAACCGAAUUGCCUAAGCUUUUCACGCUUGGCAGGUGAAUCAAAAGAUUUCCACAUGCGAUUAAAAAAUCGCUUACAAUUCGAACUAAG
.......(((((((((.((((.......))))))).((.(((((....)))))))....((((((....))))))....))))))....... ( -24.00)
>DroEre_CAF1 11978 91 - 1
GCUCAACUGAAUUGCCUAAGUUUUUCUCGCUCGACAGGUGAAUUAGGAGAAAUCCACAUCCGGUUGGAAAACC-UUUACAAUUCAAACUGAU
..(((..(((((((...(((.((((((.((.((...((((.....(((....))).)))))))).)))))).)-))..)))))))...))). ( -21.00)
>consensus
GCUAAACUGAAUUGCCUAAGUUUUUCACGCUCGACAGGUGAAUCAAAAGAUUUCCACAUGCGAUUGAAAAAUCGCUUACAAUUCGAACUGAU
.......(((((((......(((((..((((.....))))....)))))..........((((((....))))))...)))))))....... (-15.10 = -14.00 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:34 2006