| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,771,871 – 16,771,968 |
| Length | 97 |
| Max. P | 0.514606 |
| Location | 16,771,871 – 16,771,968 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.35 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -14.36 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16771871 97 + 22407834 -AAGUUU--U----CGGCA--CCCUGAAUGGCAAAUCAUCUAAAACUGAUGAUCCCAG-UUGGGGGUAGCGUAUAU--AUACAAUAUUUAUUGUUUCAGUCAUGCGGAG -.....(--(----(.((.--(((..(.(((...((((((.......)))))).))).-)..))))).((((....--..(((((....))))).......))))))). ( -24.22) >DroSec_CAF1 1488 94 + 1 -AAGUUU--U----CGGCA--CCCUGAAUGGCAAAUCAUCUAAAACUGAUGAUCCCAG-AUAGGGGUGGCAUAUAU--AUA---UAUUUAUUGUUUCAGUCAUGCGGAG -......--(----(.((.--(((((..(((...((((((.......)))))).))).-.)))))(((((....((--(..---.......)))....))))))).)). ( -24.90) >DroEre_CAF1 1482 98 + 1 -AUGUGC--CGA--AAGCA--CCCUGAAUGGCAAAUCAUCUAGAACUGAUGAUCCCAC-AUGGGGCUAGCAUAUACUCGUA---UAUUUAUUGUUUCAGUCAUGCGGAG -..(((.--(..--..)))--).(((.(((((..((((((.......)))))).....-.((..((....(((((....))---))).....))..))))))).))).. ( -24.20) >DroYak_CAF1 1492 90 + 1 -AAGUUU--U----CAGCA--CCCCGAAUGGCAAAUCAUCUAAAACUGAUGAUCCCAG-AUGGGGGUAGCAUAU------A---UAUUUAUUGUUUCAGUCAUGCGGAG -......--(----(.(((--(((((..(((...((((((.......)))))).))).-.)))))(.((((.((------(---....))))))).).....))).)). ( -23.30) >DroAna_CAF1 1535 86 + 1 UAAGAAA--U----CCACACCCCCUGAAUGGCAAAUCAUCUAGAACUGAUGAUCCCAG-GAUGGGUU------U------A---UA-UUAUUAUUACAGUUAUGCGGAG .......--(----((..((((((((...((...((((((.......)))))))))))-)..)))).------.------.---..-.........((....)).))). ( -17.20) >DroPer_CAF1 1436 99 + 1 -AAGAAUGCUCAAUAGACC--CCCAAACUGGCAAAUCAUCUAGAACUGAUGAUCCCACGAUGG---UGGGUUCUACU-AUA---CAUACAUUUUUACAGUCAUGCGGAG -(((((((....(((((((--((((...(((...((((((.......)))))).)))...)))---.))))....))-)).---....))))))).............. ( -21.40) >consensus _AAGUUU__U____CGGCA__CCCUGAAUGGCAAAUCAUCUAAAACUGAUGAUCCCAG_AUGGGGGUAGCAUAUA___AUA___UAUUUAUUGUUUCAGUCAUGCGGAG .......................(((.(((((..((((((.......))))))(((......))).................................))))).))).. (-14.36 = -14.95 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:12 2006