Locus 594

Sequence ID 2L_DroMel_CAF1
Location 1,807,056 – 1,807,157
Length 101
Max. P 0.545543
window979

overview

Window 9

Location 1,807,056 – 1,807,157
Length 101
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -20.20
Consensus MFE -16.36
Energy contribution -17.05
Covariance contribution 0.69
Combinations/Pair 1.15
Mean z-score -1.49
Structure conservation index 0.81
SVM decision value 0.02
SVM RNA-class probability 0.545543
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1807056 101 - 22407834
UAAAGAUUUUC-UAUCUCUUCGCGAGCUUUCCUGACCCCAAUGCAUCACUACUUGCGGUUCUUCUCCUCGCUCAAAUGGAGAUGAGCACCUCCCACCCUCCU
...((((....-.))))...((((((......((.(......)))......))))))((((.(((((..........))))).))))............... ( -18.20)
>DroSec_CAF1 26529 101 - 1
UAAAGAUUUUC-CAUCUCUUCGCGAACUUUCCUGACCCCAAUGCAUCACUAGUUGCGGUUCUUCUCCUCGCUUAAAUGGAGAUGAGCACCUGCCUCCAUCCU
...........-(((((((..((((........((((.((((.........)))).)))).......))))......))))))).((....))......... ( -18.36)
>DroSim_CAF1 3708 101 - 1
UAAAGAUUUUC-CAUCUCUUCGCGAGCUUUCCUGACCCCAAUGCAUCACUAGUUGCGGUUCUUCUCCUCGCUUAAAUGGAGAUGAGCACCUGCCUCCCUCCU
...........-(((((((..(((((.......((((.((((.........)))).))))......)))))......))))))).((....))......... ( -21.32)
>DroEre_CAF1 11368 101 - 1
UAAAGAUUUUCCCAUCUCUUCGUG-GCUUUCCUGACCCCAAUGCAUCACUAGUUGAGGUCCUCCUCGAAGCUUAAAUGGAGAUGAGCACCUGCCUUCCUCCU
............(((((((....(-(((((...((((.((((.........)))).))))......)))))).....))))))).((....))......... ( -22.90)
>consensus
UAAAGAUUUUC_CAUCUCUUCGCGAGCUUUCCUGACCCCAAUGCAUCACUAGUUGCGGUUCUUCUCCUCGCUUAAAUGGAGAUGAGCACCUGCCUCCCUCCU
............(((((((..(((((.......((((.((((.........)))).))))......)))))......))))))).................. (-16.36 = -17.05 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006